Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3489_RS09210 Genome accession   NZ_CP162385
Coordinates   1864510..1865550 (-) Length   346 a.a.
NCBI ID   WP_368292652.1    Uniprot ID   -
Organism   Dehalobacter sp. TBBPA1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1859510..1870550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3489_RS09185 (AB3489_09185) - 1860151..1860411 (-) 261 WP_015042391.1 stage V sporulation protein S -
  AB3489_RS09190 (AB3489_09190) - 1860569..1861339 (-) 771 WP_019226689.1 TIGR00282 family metallophosphoesterase -
  AB3489_RS09195 (AB3489_09195) - 1861373..1861885 (-) 513 WP_368292651.1 hypothetical protein -
  AB3489_RS09200 (AB3489_09200) rny 1862172..1863740 (-) 1569 WP_193352143.1 ribonuclease Y -
  AB3489_RS09205 (AB3489_09205) - 1863990..1864520 (-) 531 WP_019226691.1 regulatory protein RecX -
  AB3489_RS09210 (AB3489_09210) recA 1864510..1865550 (-) 1041 WP_368292652.1 recombinase RecA Machinery gene
  AB3489_RS09215 (AB3489_09215) - 1865684..1866928 (-) 1245 WP_368292653.1 competence/damage-inducible protein A -
  AB3489_RS09220 (AB3489_09220) pgsA 1867124..1867687 (-) 564 WP_368292654.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AB3489_RS09225 (AB3489_09225) rimO 1867684..1869009 (-) 1326 WP_368292655.1 30S ribosomal protein S12 methylthiotransferase RimO -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37181.53 Da        Isoelectric Point: 5.7319

>NTDB_id=1024990 AB3489_RS09210 WP_368292652.1 1864510..1865550(-) (recA) [Dehalobacter sp. TBBPA1]
MATPDKLKALDIALSQIEKQFGKGAIMKLGEASDRMAVETISTGSLALDLALGVGGVPRGRVIEVYGPESSGKTTVTLHI
IAEAQKTGGVAAFIDAEHALDPVYARALGVNVDDLLVSQPDTGEQALEICEALVRSGAVDVVVIDSVAALVPRAEIEGEM
GDSHMGLHARLMSQALRKLTGCISKSHTCVIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVKKQDVIKQGQEIIG
NRTRVKVVKNKVAPPFNFADFDLVYGEGISREGSIVDMGSETGVLMKSGAWYSYNGERLGQGRENVKDFLRQHPDIAAEI
ESKVRNLVLVSKDKTKGAQDDSMNDE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1024990 AB3489_RS09210 WP_368292652.1 1864510..1865550(-) (recA) [Dehalobacter sp. TBBPA1]
ATGGCTACTCCAGATAAACTAAAAGCATTGGATATTGCGCTGAGCCAAATTGAAAAGCAGTTTGGCAAGGGAGCGATTAT
GAAACTCGGCGAAGCTTCGGACAGAATGGCTGTTGAGACGATTTCAACAGGTTCATTGGCACTGGATTTGGCTTTAGGCG
TTGGCGGAGTTCCCAGAGGCCGGGTAATAGAGGTATATGGACCGGAGTCTTCGGGGAAAACCACCGTAACGCTGCATATT
ATTGCTGAAGCACAAAAAACAGGCGGCGTTGCAGCTTTTATCGATGCAGAGCATGCCCTTGACCCAGTATATGCCCGTGC
GCTGGGTGTGAATGTCGACGATCTGCTGGTTTCTCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCTGTGAAGCCCTTG
TCCGCAGCGGCGCGGTTGATGTCGTTGTTATTGACTCGGTGGCGGCACTCGTGCCACGGGCTGAAATCGAAGGGGAGATG
GGCGATTCCCATATGGGGCTGCATGCCCGTCTGATGTCCCAGGCATTGCGCAAACTTACCGGGTGCATCAGTAAAAGCCA
TACCTGTGTCATCTTTATTAATCAGATCAGGGAGAAAGTCGGCGTGATGTTCGGCAACCCGGAGACGACGACCGGGGGAC
GAGCGCTGAAATTTTATGCTTCAGTCCGGCTGGAAGTCAAAAAGCAGGATGTCATCAAGCAGGGGCAGGAAATCATCGGC
AACCGGACCCGCGTAAAGGTCGTCAAAAACAAGGTTGCACCGCCGTTTAACTTTGCTGATTTCGACCTGGTTTATGGCGA
AGGGATATCCAGGGAAGGCAGTATTGTCGATATGGGATCGGAAACAGGTGTCCTTATGAAATCGGGCGCCTGGTATTCCT
ACAATGGCGAAAGGCTTGGACAGGGAAGAGAGAATGTCAAGGACTTTCTGCGTCAGCATCCAGATATTGCTGCAGAGATT
GAGAGCAAAGTGCGCAATCTGGTTCTGGTCTCGAAAGACAAGACAAAGGGCGCTCAGGACGACAGCATGAATGATGAGTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.34

92.775

0.662
  recA Neisseria gonorrhoeae MS11

65.089

97.688

0.636
  recA Neisseria gonorrhoeae MS11

65.089

97.688

0.636
  recA Neisseria gonorrhoeae strain FA1090

65.089

97.688

0.636
  recA Latilactobacillus sakei subsp. sakei 23K

67.692

93.931

0.636
  recA Ralstonia pseudosolanacearum GMI1000

70.227

89.306

0.627
  recA Glaesserella parasuis strain SC1401

63.05

98.555

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.865

98.844

0.621
  recA Vibrio cholerae strain A1552

62.865

98.844

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.314

97.688

0.619
  recA Pseudomonas stutzeri DSM 10701

64.157

95.954

0.616
  recA Streptococcus mutans UA159

62.647

98.266

0.616
  recA Streptococcus mitis SK321

60.571

100

0.613
  recA Streptococcus mitis NCTC 12261

60.571

100

0.613
  recA Streptococcus pyogenes NZ131

64.308

93.931

0.604
  recA Acinetobacter baylyi ADP1

61.834

97.688

0.604
  recA Acinetobacter baumannii D1279779

62.997

94.509

0.595
  recA Streptococcus pneumoniae R6

62.883

94.22

0.592
  recA Streptococcus pneumoniae Rx1

62.883

94.22

0.592
  recA Streptococcus pneumoniae D39

62.883

94.22

0.592
  recA Streptococcus pneumoniae TIGR4

62.883

94.22

0.592
  recA Lactococcus lactis subsp. cremoris KW2

62.733

93.064

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.617

92.775

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.35

94.22

0.578
  recA Helicobacter pylori 26695

62.112

93.064

0.578
  recA Helicobacter pylori strain NCTC11637

62.112

93.064

0.578

Multiple sequence alignment