Detailed information NTG1024179

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: ABVR70_RS09625
• Genome accession: NZ_CP162120
• Coordinates: 2170159..2171343 (-)
• Length: 394 a.a.
• NCBI ID: WP_014483649.1
• Uniprot ID: A0A2K9BQ95
• Organism: Bifidobacterium breve strain BS2-PS1
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	2165403..2207586	2170159..2171343	within	0

Gene organization within MGE regions

Location: 2165403..2207586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVR70_RS09610 (ABVR70_09610)	raiA	2168178..2168840 (-)	663	WP_014483651.1	ribosome-associated translation inhibitor RaiA	-
ABVR70_RS09620 (ABVR70_09620)	-	2169563..2170162 (-)	600	WP_003830647.1	regulatory protein RecX	-
ABVR70_RS09625 (ABVR70_09625)	recA	2170159..2171343 (-)	1185	WP_014483649.1	recombinase RecA	Machinery gene
ABVR70_RS09630 (ABVR70_09630)	-	2171650..2171883 (-)	234	WP_003830645.1	DUF3046 domain-containing protein	-
ABVR70_RS09635 (ABVR70_09635)	-	2171990..2172508 (-)	519	WP_003830644.1	helix-turn-helix domain-containing protein	-
ABVR70_RS09640 (ABVR70_09640)	-	2172568..2173125 (-)	558	WP_003830643.1	CinA family protein	-
ABVR70_RS09645 (ABVR70_09645)	pgsA	2173226..2173861 (-)	636	WP_015438915.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ABVR70_RS09650 (ABVR70_09650)	-	2174040..2176895 (-)	2856	WP_003830641.1	DNA translocase FtsK	-
ABVR70_RS09655 (ABVR70_09655)	-	2177106..2177855 (+)	750	WP_033892489.1	Fic family protein	-
ABVR70_RS09660 (ABVR70_09660)	miaA	2177898..2178881 (-)	984	WP_003830639.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	-
ABVR70_RS09665 (ABVR70_09665)	miaB	2179004..2180455 (-)	1452	WP_367908232.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	-
ABVR70_RS09670 (ABVR70_09670)	-	2180528..2181328 (+)	801	WP_003830637.1	GTP pyrophosphokinase family protein	-
ABVR70_RS09675 (ABVR70_09675)	-	2181325..2182272 (-)	948	WP_003830636.1	DMT family transporter	-
ABVR70_RS09680 (ABVR70_09680)	-	2182395..2183216 (-)	822	WP_003830635.1	Bax inhibitor-1/YccA family protein	-
ABVR70_RS09685 (ABVR70_09685)	-	2183295..2184080 (+)	786	WP_003830634.1	response regulator transcription factor	-
ABVR70_RS09690 (ABVR70_09690)	-	2184143..2184781 (+)	639	WP_003830633.1	GNAT family N-acetyltransferase	-
ABVR70_RS09695 (ABVR70_09695)	acnA	2184900..2187599 (-)	2700	WP_032738324.1	aconitate hydratase AcnA	-
ABVR70_RS09700 (ABVR70_09700)	-	2187718..2190330 (-)	2613	WP_003830631.1	cation-translocating P-type ATPase	-
ABVR70_RS09705 (ABVR70_09705)	-	2190395..2190979 (-)	585	WP_003830630.1	hypothetical protein	-
ABVR70_RS09710 (ABVR70_09710)	-	2190991..2192250 (-)	1260	WP_003830629.1	class I SAM-dependent RNA methyltransferase	-
ABVR70_RS09715 (ABVR70_09715)	-	2192240..2193016 (-)	777	WP_003830628.1	DUF3159 domain-containing protein	-
ABVR70_RS09720 (ABVR70_09720)	-	2193032..2193877 (-)	846	WP_003830627.1	DUF3710 domain-containing protein	-
ABVR70_RS09725 (ABVR70_09725)	-	2194002..2194862 (+)	861	WP_003830626.1	exodeoxyribonuclease III	-
ABVR70_RS09730 (ABVR70_09730)	-	2195171..2197180 (-)	2010	WP_003830625.1	ABC transporter ATP-binding protein	-
ABVR70_RS09735 (ABVR70_09735)	-	2197203..2198207 (-)	1005	WP_003830624.1	ABC transporter permease	-
ABVR70_RS09740 (ABVR70_09740)	-	2198226..2199152 (-)	927	WP_003830623.1	ABC transporter permease	-
ABVR70_RS09745 (ABVR70_09745)	-	2199542..2201182 (-)	1641	WP_003830622.1	ABC transporter substrate-binding protein	-
ABVR70_RS09750 (ABVR70_09750)	-	2201436..2202455 (-)	1020	WP_003830621.1	tyrosine recombinase XerC	-
ABVR70_RS09755 (ABVR70_09755)	-	2202617..2203429 (+)	813	WP_003830620.1	ABC transporter ATP-binding protein	-
ABVR70_RS09760 (ABVR70_09760)	-	2203426..2206284 (+)	2859	WP_003830619.1	ABC transporter permease	-
ABVR70_RS09765 (ABVR70_09765)	-	2206537..2206794 (-)	258	WP_025263055.1	DUF6725 family protein	-

Sequence

Protein

• Length: 394 a.a.
• Molecular weight: 41647.34 Da
• Isoelectric Point: 5.8556

>NTDB_id=1024179 ABVR70_RS09625 WP_014483649.1 2170159..2171343(-) (recA) [Bifidobacterium breve strain BS2-PS1]
MALETKPAQDPATETKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPVQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVAAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDEDAAAAAAVSEAAAADAAKDTKATAAPAAKSSRAKARS

Nucleotide

• Length: 1185 bp

>NTDB_id=1024179 ABVR70_RS09625 WP_014483649.1 2170159..2171343(-) (recA) [Bifidobacterium breve strain BS2-PS1]
ATGGCACTTGAGACCAAGCCGGCCCAAGATCCGGCAACCGAGACCAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACTGCTTTGGCGCAGGTCGAAAAAAGCTTCGGCAAGGGCTCGGCCATGCGCCTCGGCGATCAGCCCGTGCAAAATG
TCGAAGTAATCCCTACCGGTTCGCTCGCGCTCGACATGGCGTTGGGCATTGGCGGCCTGCCGAAGGGCCGCATCGTGGAA
ATCTATGGTCCCGAATCGTCCGGTAAAACCACGCTTGCCCTGCATGTGGTGGCCAATGCCCAGAAGAAGGGTGGCGTGGC
CGCATACATTGACGCCGAGCACGCGCTCGATCCGGCCTATGCTCGCAAACTTGGCGTGGACACTGATTCGCTTATCGTTT
CTCAGCCGGACAACGGCGAACAGGCTCTTGAGATTGCAGACATGCTGATTCGTTCTGGCGCGCTTGATGTCATCGTTATC
GATTCGGTGGCGGCTCTGGTGCCAAAGGCCGAGATCGAAGGCGAGATGGGAGACAGCCACGTCGGTTTGCAGGCCCGACT
CATGAGCCAGGCTCTGCGCAAGATGACCGGTGCCTTGGCCCAAGCAGGTACCACCGCCATCTTCATCAACCAGCTACGCG
AAAAGATCGGCGTGTTCTTCGGTAATCCCGAAACCACTACCGGTGGCAAGGCTCTGAAGTTCTATGCCTCTGTGCGTCTT
GACATTCGCCGTATCCAGACCTTGAAGAACGGTGATGAAGCGGTGGGCAACCGTACGCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCCTTCAAGTCCGCCGAATTCGACATGCTTTACGGCGAAGGTATCTCCCGCGAAGGTTCGGTCATCGACA
TGGCCCAACAGGTCGGCGTGGTCAAGAAGTCCGGCTCGTGGTTCACCTATGAGGGCGACCAGCTTGGTCAGGGTCGAGAG
AAGGTTCGTCAGTTCCTCAAGGACAACCCGGCCATCACCGAAGAGATTGAAAACAAGGTCAAGGCAGAATTTGGTTTGAT
CGGTTCCGCCGATCAGTTTGCCGAAGACGAAGACGCTGCTGCAGCTGCCGCAGTCAGCGAGGCCGCTGCGGCCGATGCCG
CCAAGGACACCAAGGCCACTGCAGCGCCTGCCGCCAAGTCGTCTCGCGCCAAGGCCCGATCATGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (26-286)

3D structure

• AlphaFold DB: A0A2K9BQ95

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Acinetobacter baumannii D1279779	63.743	86.802	0.553
recA	Pseudomonas stutzeri DSM 10701	65.465	84.518	0.553
recA	Acinetobacter baylyi ADP1	64.583	85.279	0.551
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	63.609	85.787	0.546
recA	Streptococcus mitis NCTC 12261	57.808	92.64	0.536
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	61.471	86.294	0.53
recA	Ralstonia pseudosolanacearum GMI1000	66.773	79.442	0.53
recA	Bacillus subtilis subsp. subtilis str. 168	64.506	82.234	0.53
recA	Streptococcus mitis SK321	56.948	93.147	0.53
recA	Neisseria gonorrhoeae strain FA1090	63.804	82.741	0.528
recA	Neisseria gonorrhoeae MS11	63.804	82.741	0.528
recA	Neisseria gonorrhoeae MS11	63.804	82.741	0.528
recA	Glaesserella parasuis strain SC1401	61.538	85.787	0.528
recA	Vibrio cholerae O1 biovar El Tor strain E7946	63.777	81.98	0.523
recA	Vibrio cholerae strain A1552	63.777	81.98	0.523
recA	Streptococcus mutans UA159	60.355	85.787	0.518
recA	Latilactobacillus sakei subsp. sakei 23K	62.154	82.487	0.513
recA	Lactococcus lactis subsp. cremoris KW2	61.212	83.756	0.513
recA	Streptococcus pneumoniae D39	59.763	85.787	0.513
recA	Streptococcus pneumoniae TIGR4	59.763	85.787	0.513
recA	Streptococcus pneumoniae Rx1	59.763	85.787	0.513
recA	Streptococcus pneumoniae R6	59.763	85.787	0.513
recA	Streptococcus pyogenes NZ131	59.821	85.279	0.51
recA	Helicobacter pylori strain NCTC11637	60.976	83.249	0.508
recA	Helicobacter pylori 26695	60.976	83.249	0.508
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.05	85.533	0.505