Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB2L57_RS07390 Genome accession   NZ_CP162025
Coordinates   1554448..1555515 (+) Length   355 a.a.
NCBI ID   WP_292809828.1    Uniprot ID   -
Organism   Microbacterium sp. HA-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549448..1560515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2L57_RS07365 (AB2L57_07370) crtI 1549487..1551064 (-) 1578 WP_409048425.1 phytoene desaturase family protein -
  AB2L57_RS07370 (AB2L57_07375) - 1551061..1552011 (-) 951 WP_409048602.1 phytoene/squalene synthase family protein -
  AB2L57_RS07375 (AB2L57_07380) - 1552011..1553084 (-) 1074 WP_292809834.1 polyprenyl synthetase family protein -
  AB2L57_RS07380 (AB2L57_07385) idi 1553081..1553662 (-) 582 WP_292809832.1 isopentenyl-diphosphate Delta-isomerase -
  AB2L57_RS07385 (AB2L57_07390) - 1553746..1554195 (+) 450 WP_292809830.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB2L57_RS07390 (AB2L57_07395) recA 1554448..1555515 (+) 1068 WP_292809828.1 recombinase RecA Machinery gene
  AB2L57_RS07395 (AB2L57_07400) - 1555518..1556183 (+) 666 WP_292809826.1 regulatory protein RecX -
  AB2L57_RS07400 (AB2L57_07405) miaB 1556224..1557774 (+) 1551 WP_292809824.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB2L57_RS07405 (AB2L57_07410) miaA 1557771..1558727 (+) 957 WP_292809822.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  AB2L57_RS07410 (AB2L57_07415) dapF 1558738..1559610 (+) 873 WP_292809820.1 diaminopimelate epimerase -
  AB2L57_RS07415 (AB2L57_07420) - 1559638..1560282 (-) 645 WP_292809818.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 37978.55 Da        Isoelectric Point: 6.5195

>NTDB_id=1023697 AB2L57_RS07390 WP_292809828.1 1554448..1555515(+) (recA) [Microbacterium sp. HA-8]
MPSPADREKALESALAQIDRQFGKGSVMRLGSDERAPVEVIQTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYAMKLGVDIDQLLVSQPDTGEQALEIADMLIRSGSIDLIVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTGTTMIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSDAVG
NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVEHAIVKKSGAWYTYEGEQLGQGKENARNFLLKNADIAADI
EQKIKQKLGIGVPKALPQVPADAPAAEQLAKKRPA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1023697 AB2L57_RS07390 WP_292809828.1 1554448..1555515(+) (recA) [Microbacterium sp. HA-8]
ATGCCATCACCCGCCGACCGCGAGAAGGCCCTCGAATCCGCCCTCGCACAGATCGACCGTCAGTTCGGAAAGGGTTCGGT
CATGCGGCTGGGCAGCGACGAGCGCGCACCGGTCGAGGTCATCCAGACCGGCTCGATCGCGCTCGACGTCGCCCTCGGCG
TGGGCGGTCTCCCGCGCGGGCGCATCATCGAGATCTACGGCCCCGAGTCCTCGGGAAAGACGACGCTCACCCTGCACGCG
ATCGCCAACGCGCAGCGCGCGGGCGGCATCGCGGCCTTCATCGACGCCGAGCACGCCCTCGACCCCGAGTATGCGATGAA
GCTCGGGGTCGACATCGATCAGCTCCTCGTGTCGCAGCCGGACACGGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGA
TCCGCTCGGGATCGATCGACCTCATCGTCATCGACTCGGTCGCGGCTCTCGTCCCGCGCGCCGAGATCGAGGGTGAGATG
GGTGACTCCCACGTGGGTCTGCAGGCGCGCCTGATGTCTCAGGCGCTGCGCAAGCTCACCGGTGGGCTCAACCAGACCGG
CACGACGATGATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTGTTCTTCGGTTCTCCCGAGACCACCGCGGGTGGCA
AGGCGCTGAAGTTCTACGCCTCGGTGCGCCTCGACATCCGCCGTATCGAGACGCTGAAGGACGGCTCGGACGCCGTCGGC
AACCGCACCCGGGTCAAGGTCGTCAAGAACAAGATGGCACCGCCGTTCAAGCAGGCCGAGTTCGACATCCTGTACGGCAC
GGGCATCTCGCGCGAGGGCAGCCTGATCGATTTCGGCGTCGAGCACGCCATCGTGAAGAAGTCGGGCGCCTGGTACACGT
ACGAGGGCGAGCAGCTGGGTCAGGGCAAGGAGAACGCCCGCAACTTCCTGCTCAAGAACGCCGACATCGCGGCCGACATC
GAACAGAAGATCAAGCAGAAGCTCGGCATCGGCGTGCCCAAGGCGCTGCCTCAGGTGCCGGCCGACGCGCCCGCCGCCGA
GCAGCTGGCCAAGAAGCGCCCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

64.14

96.62

0.62
  recA Ralstonia pseudosolanacearum GMI1000

69.649

88.169

0.614
  recA Acinetobacter baumannii D1279779

67.183

90.986

0.611
  recA Pseudomonas stutzeri DSM 10701

66.873

90.986

0.608
  recA Neisseria gonorrhoeae strain FA1090

65.951

91.831

0.606
  recA Neisseria gonorrhoeae MS11

65.951

91.831

0.606
  recA Neisseria gonorrhoeae MS11

65.951

91.831

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

65.951

91.831

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

90.986

0.603
  recA Vibrio cholerae strain A1552

66.254

90.986

0.603
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

92.958

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

91.831

0.58
  recA Glaesserella parasuis strain SC1401

60.294

95.775

0.577
  recA Helicobacter pylori strain NCTC11637

62.121

92.958

0.577
  recA Lactococcus lactis subsp. cremoris KW2

62.121

92.958

0.577
  recA Helicobacter pylori 26695

62.121

92.958

0.577
  recA Streptococcus pneumoniae D39

61.818

92.958

0.575
  recA Streptococcus pneumoniae R6

61.818

92.958

0.575
  recA Streptococcus pneumoniae TIGR4

61.818

92.958

0.575
  recA Streptococcus mitis NCTC 12261

61.818

92.958

0.575
  recA Streptococcus mitis SK321

61.818

92.958

0.575
  recA Streptococcus pneumoniae Rx1

61.818

92.958

0.575
  recA Streptococcus mutans UA159

61.398

92.676

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

92.676

0.566
  recA Streptococcus pyogenes NZ131

61.28

92.394

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

90.141

0.535

Multiple sequence alignment