Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3F25_RS08985 Genome accession   NZ_CP162010
Coordinates   1894819..1895877 (-) Length   352 a.a.
NCBI ID   WP_373603485.1    Uniprot ID   -
Organism   Aggregatibacter sp. HMT-949 strain W10649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889819..1900877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3F25_RS08970 (AB3F25_08965) - 1893076..1893903 (+) 828 WP_373603482.1 Cof-type HAD-IIB family hydrolase -
  AB3F25_RS08975 (AB3F25_08970) crcB 1893903..1894286 (+) 384 WP_373603483.1 fluoride efflux transporter CrcB -
  AB3F25_RS08980 (AB3F25_08975) recX 1894287..1894745 (-) 459 WP_373603484.1 recombination regulator RecX -
  AB3F25_RS08985 (AB3F25_08980) recA 1894819..1895877 (-) 1059 WP_373603485.1 recombinase RecA Machinery gene
  AB3F25_RS08990 (AB3F25_08985) - 1896022..1896864 (-) 843 WP_373603486.1 patatin family protein -
  AB3F25_RS08995 (AB3F25_08990) rep 1897066..1899078 (-) 2013 WP_373603487.1 DNA helicase Rep -
  AB3F25_RS09000 (AB3F25_08995) - 1899268..1899429 (-) 162 Protein_1724 YceK/YidQ family lipoprotein -
  AB3F25_RS09005 (AB3F25_09000) coaD 1899464..1899943 (-) 480 WP_373604364.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37647.20 Da        Isoelectric Point: 4.9642

>NTDB_id=1023501 AB3F25_RS08985 WP_373603485.1 1894819..1895877(-) (recA) [Aggregatibacter sp. HMT-949 strain W10649]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKALDVESVSTGSIGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELLVSQPDNGEQALEICDALVRSGAVDVVIVDSVAALTPKAEIEGEM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGEEVIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELIELGVKHKLVEKSGAWYAYNGEKIGQGKANAMKWLHENPAKADEL
EAKLRAELVANPEQALMADIEQLDDDTADNEL

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1023501 AB3F25_RS08985 WP_373603485.1 1894819..1895877(-) (recA) [Aggregatibacter sp. HMT-949 strain W10649]
ATGGCGACTCAAGAAGAAAAACAAAAAGCCCTTGCGGCGGCATTAGGTCAAATTGAAAAGCAATTTGGTAAGGGTTCGAT
TATGAAATTGGGCGATACCAAAGCGCTTGATGTCGAATCGGTTTCAACCGGCTCAATCGGCCTGGATGTCGCGTTGGGGA
TCGGCGGTTTGCCGATGGGACGTATCGTCGAAATCTTCGGGCCGGAGTCCTCCGGTAAAACTACGCTAACTCTCTCCGTT
ATTGCGCAAGCGCAAAAAGCAGGTAAAACCTGTGCCTTTATTGATGCGGAACATGCGCTGGATCCGATTTATGCGGCGAA
ACTTGGCGTAGATGTAAAAGAATTATTGGTTTCCCAACCGGATAACGGCGAGCAAGCGTTGGAAATCTGTGACGCTTTAG
TACGTTCCGGTGCGGTAGATGTTGTGATTGTGGACTCTGTCGCTGCATTGACGCCGAAAGCGGAAATCGAAGGCGAGATG
GGCGATTCGCATATGGGGTTACAAGCGCGTTTGATGTCCCAAGCGTTACGTAAATTGACCGGTCAAATTAAAAATGCAAA
CTGCTTAGTCGTGTTTATTAACCAAATTCGGATGAAAATCGGTGTGATGTTCGGCAATCCGGAAACTACAACGGGCGGTA
ACGCGCTGAAATTCTATTCTTCCGTGCGACTGGATATTCGTCGCACCGGTTCGGTGAAAGACGGCGAGGAAGTCATTGGT
AACGAAACCCGCGTAAAAGTGGTGAAAAATAAATTGGCCGCCCCTTTCCGTCAAGTGGATTTCCAAATCCTTTATGGCGA
AGGCATTTCAAAGGCCGGCGAACTGATTGAATTGGGCGTAAAACATAAACTTGTGGAGAAATCCGGCGCTTGGTATGCCT
ACAACGGTGAAAAGATCGGTCAAGGTAAAGCAAACGCTATGAAATGGTTGCATGAAAACCCGGCGAAAGCGGACGAACTT
GAAGCTAAACTTCGTGCGGAATTGGTTGCAAATCCCGAACAGGCACTAATGGCAGATATTGAGCAACTCGACGACGATAC
TGCCGACAACGAACTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

76.676

97.443

0.747
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.676

97.443

0.747
  recA Glaesserella parasuis strain SC1401

76.093

97.443

0.741
  recA Pseudomonas stutzeri DSM 10701

76.923

92.33

0.71
  recA Neisseria gonorrhoeae strain FA1090

74.613

91.761

0.685
  recA Neisseria gonorrhoeae MS11

74.613

91.761

0.685
  recA Neisseria gonorrhoeae MS11

74.613

91.761

0.685
  recA Acinetobacter baylyi ADP1

72

92.33

0.665
  recA Ralstonia pseudosolanacearum GMI1000

72.414

90.625

0.656
  recA Acinetobacter baumannii D1279779

70.552

92.614

0.653
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

95.17

0.594
  recA Helicobacter pylori 26695

61.176

96.591

0.591
  recA Helicobacter pylori strain NCTC11637

60.588

96.591

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.353

90.057

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

65.584

87.5

0.574
  recA Streptococcus pneumoniae Rx1

56.41

99.716

0.562
  recA Streptococcus pneumoniae D39

56.41

99.716

0.562
  recA Streptococcus pneumoniae R6

56.41

99.716

0.562
  recA Streptococcus pneumoniae TIGR4

56.41

99.716

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.245

92.898

0.56
  recA Streptococcus mutans UA159

59.271

93.466

0.554
  recA Streptococcus mitis NCTC 12261

58.967

93.466

0.551
  recA Streptococcus mitis SK321

58.663

93.466

0.548
  recA Latilactobacillus sakei subsp. sakei 23K

59.752

91.761

0.548
  recA Streptococcus pyogenes NZ131

57.622

93.182

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.846

92.33

0.534

Multiple sequence alignment