Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB3G49_RS10370 Genome accession   NZ_CP161986
Coordinates   2179969..2181018 (+) Length   349 a.a.
NCBI ID   WP_000344169.1    Uniprot ID   N9L2B2
Organism   Acinetobacter baumannii strain SIMBA003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2164890..2181018 2179969..2181018 within 0


Gene organization within MGE regions


Location: 2164890..2181018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G49_RS10245 (AB3G49_10245) - 2164890..2165621 (-) 732 WP_367764017.1 hypothetical protein -
  AB3G49_RS10250 (AB3G49_10250) - 2165611..2166153 (-) 543 WP_367764018.1 hypothetical protein -
  AB3G49_RS10255 (AB3G49_10255) - 2166150..2166914 (-) 765 WP_367764020.1 ATP-binding protein -
  AB3G49_RS10260 (AB3G49_10260) - 2166911..2167954 (-) 1044 WP_264413586.1 hypothetical protein -
  AB3G49_RS10265 (AB3G49_10265) - 2167958..2169436 (-) 1479 WP_001055561.1 DNA cytosine methyltransferase -
  AB3G49_RS10270 (AB3G49_10270) - 2169433..2169819 (-) 387 WP_264748119.1 hypothetical protein -
  AB3G49_RS10275 (AB3G49_10275) - 2169825..2170385 (-) 561 WP_367764021.1 hypothetical protein -
  AB3G49_RS10280 (AB3G49_10280) - 2170385..2171026 (-) 642 WP_264413582.1 hypothetical protein -
  AB3G49_RS10285 (AB3G49_10285) - 2171023..2171475 (-) 453 WP_367764022.1 hypothetical protein -
  AB3G49_RS10290 (AB3G49_10290) - 2171472..2171654 (-) 183 WP_057073341.1 hypothetical protein -
  AB3G49_RS10295 (AB3G49_10295) - 2171886..2172260 (-) 375 WP_216146766.1 hypothetical protein -
  AB3G49_RS10300 (AB3G49_10300) - 2172296..2172499 (-) 204 WP_016145624.1 helix-turn-helix domain-containing protein -
  AB3G49_RS10305 (AB3G49_10305) - 2172636..2173400 (+) 765 WP_032036491.1 S24 family peptidase -
  AB3G49_RS10310 (AB3G49_10310) - 2173404..2173688 (+) 285 WP_032036493.1 hypothetical protein -
  AB3G49_RS10315 (AB3G49_10315) - 2173883..2174215 (+) 333 WP_032036495.1 hypothetical protein -
  AB3G49_RS10320 (AB3G49_10320) - 2174296..2174625 (+) 330 WP_337078337.1 hypothetical protein -
  AB3G49_RS10325 (AB3G49_10325) - 2174622..2174993 (+) 372 WP_031980691.1 hypothetical protein -
  AB3G49_RS10330 (AB3G49_10330) - 2175150..2175443 (+) 294 WP_000978815.1 hypothetical protein -
  AB3G49_RS10335 (AB3G49_10335) - 2175440..2175781 (+) 342 WP_367764023.1 hypothetical protein -
  AB3G49_RS10340 (AB3G49_10340) - 2175778..2176320 (+) 543 WP_202724810.1 hypothetical protein -
  AB3G49_RS10345 (AB3G49_10345) - 2176317..2176841 (+) 525 WP_367764024.1 hypothetical protein -
  AB3G49_RS10350 (AB3G49_10350) - 2176838..2177032 (+) 195 WP_367764025.1 hypothetical protein -
  AB3G49_RS10355 (AB3G49_10355) - 2177154..2178476 (-) 1323 WP_367764026.1 tyrosine-type recombinase/integrase -
  AB3G49_RS10360 (AB3G49_10360) - 2178713..2179399 (+) 687 WP_031980688.1 HAD-IA family hydrolase -
  AB3G49_RS10365 (AB3G49_10365) - 2179383..2179823 (+) 441 WP_000040959.1 RNA-binding S4 domain-containing protein -
  AB3G49_RS10370 (AB3G49_10370) recA 2179969..2181018 (+) 1050 WP_000344169.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37891.25 Da        Isoelectric Point: 4.7769

>NTDB_id=1023198 AB3G49_RS10370 WP_000344169.1 2179969..2181018(+) (recA) [Acinetobacter baumannii strain SIMBA003]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKSGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TKVKVVKNKMAPPFKEAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRYFEENTQIAEEIER
NIREQLLTTGTNGAVQIEDEEEPDLLLES

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1023198 AB3G49_RS10370 WP_000344169.1 2179969..2181018(+) (recA) [Acinetobacter baumannii strain SIMBA003]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCTGCTTTGAGCCAAATTGAGAAGCAATTTGGTAAAAATACGGTTATGCG
TCTTGGTGATAACACTGTTCAAGCAGTTGAAGCCGTATCTACAGGTTCTTTAACTTTAGACATCGCATTGGGGATTGGTG
GTTTACCAAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCTGGTAAAACCACAATGACATTGCAAGCAATTGCT
CAATGTCAAAAATCTGGTGGTACATGTGCCTTCATTGATGCTGAGCACGCCCTAGACCCTCAATATGCACGCAAGCTTGG
TGTAGATATTGATAACCTACTTGTTTCACAACCCGACAATGGTGAGCAAGCACTTGAAATTGCTGACATGCTTGTCCGTT
CAGGCGCAATTGATTTAATCGTTGTGGACTCGGTAGCTGCACTTACCCCTAAAGCAGAAATCGAAGGTGAGATGGGTGAC
TCTCATATGGGTCTACAAGCACGTCTTATGAGCCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACTACCACTGGTGGTAACGCTC
TTAAATTCTACGCTTCAGTTCGTTTAGATATTCGTCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTGTTGGTTCAGAA
ACTAAAGTTAAAGTCGTTAAGAACAAAATGGCTCCTCCGTTTAAAGAAGCTATTTTCCAAATTCTATACGGTAAAGGTAC
TAACCAACTAGGTGAACTTGTAGATTTAGCTGTACAACAGGATATCGTACAAAAAGCTGGTGCATGGTATTCATATCAAG
GCAATAAAATTGGCCAAGGTAAAAACAATGTAATTCGCTATTTTGAAGAAAATACTCAAATAGCTGAAGAAATTGAACGT
AATATCCGTGAACAATTGCTGACTACAGGCACAAATGGTGCAGTTCAAATTGAAGATGAAGAAGAGCCAGATCTTTTATT
AGAATCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9L2B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

99.713

100

0.997
  recA Acinetobacter baylyi ADP1

93.084

99.427

0.926
  recA Pseudomonas stutzeri DSM 10701

75.602

95.129

0.719
  recA Vibrio cholerae strain A1552

73.7

93.696

0.691
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.696

0.691
  recA Ralstonia pseudosolanacearum GMI1000

70.517

94.269

0.665
  recA Glaesserella parasuis strain SC1401

71.605

92.837

0.665
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.808

98.281

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.746

94.842

0.605
  recA Helicobacter pylori strain NCTC11637

64.22

93.696

0.602
  recA Helicobacter pylori 26695

63.914

93.696

0.599
  recA Streptococcus pyogenes NZ131

58.924

100

0.596
  recA Streptococcus mitis SK321

60.411

97.708

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.883

93.41

0.587
  recA Streptococcus pneumoniae D39

61.963

93.41

0.579
  recA Streptococcus mitis NCTC 12261

61.963

93.41

0.579
  recA Streptococcus pneumoniae Rx1

61.963

93.41

0.579
  recA Streptococcus pneumoniae R6

61.963

93.41

0.579
  recA Streptococcus pneumoniae TIGR4

61.963

93.41

0.579
  recA Streptococcus mutans UA159

61.585

93.983

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

62.422

92.264

0.576
  recA Lactococcus lactis subsp. cremoris KW2

58.824

92.55

0.544
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

91.977

0.539

Multiple sequence alignment