Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB1723_RS03515 Genome accession   NZ_CP160633
Coordinates   716713..717750 (+) Length   345 a.a.
NCBI ID   WP_367381967.1    Uniprot ID   -
Organism   Stenotrophomonas cyclobalanopsidis strain Ed1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 711713..722750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1723_RS03495 (AB1723_03495) - 712095..713402 (+) 1308 WP_367381964.1 MFS family transporter -
  AB1723_RS03500 (AB1723_03500) - 713464..713964 (+) 501 WP_367381965.1 CinA family protein -
  AB1723_RS03505 (AB1723_03505) ubiB 714000..715682 (+) 1683 WP_367381966.1 2-polyprenylphenol 6-hydroxylase -
  AB1723_RS03510 (AB1723_03510) lexA 715859..716494 (+) 636 WP_079221455.1 transcriptional repressor LexA -
  AB1723_RS03515 (AB1723_03515) recA 716713..717750 (+) 1038 WP_367381967.1 recombinase RecA Machinery gene
  AB1723_RS03520 (AB1723_03520) recX 717862..718353 (+) 492 WP_367381968.1 recombination regulator RecX -
  AB1723_RS03525 (AB1723_03525) alaS 718466..721114 (+) 2649 WP_367381969.1 alanine--tRNA ligase -
  AB1723_RS03530 (AB1723_03530) csrA 721266..721469 (+) 204 WP_079221459.1 carbon storage regulator CsrA -
  AB1723_RS03540 (AB1723_03540) - 721796..722547 (-) 752 Protein_676 TonB-dependent receptor -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37134.64 Da        Isoelectric Point: 4.7662

>NTDB_id=1021725 AB1723_RS03515 WP_367381967.1 716713..717750(+) (recA) [Stenotrophomonas cyclobalanopsidis strain Ed1]
MDENKKRALAAALGQIEKQFGKGSVMRMGDRVVEPVEAIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKMGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDILVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTKIKVVKNKLAPPFKQVITEILYGEGISREGELIDMGVEAKLVEKAGAWYSYGEERIGQGKDNARGYLRDNPTVAAKL
EAELREKFQPAEAAREEGDDDGDDE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1021725 AB1723_RS03515 WP_367381967.1 716713..717750(+) (recA) [Stenotrophomonas cyclobalanopsidis strain Ed1]
ATGGACGAGAACAAAAAGCGCGCATTGGCTGCTGCTCTGGGCCAGATCGAAAAGCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTGGTCGAACCCGTCGAAGCCATCCCGACCGGCTCGCTGATGCTCGACATCGCACTGGGCATCGGTG
GTCTGCCGAAGGGTCGTGTCGTTGAAATCTACGGTCCGGAGTCGTCGGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
GAATGCCAGAAGATGGGTGGCACCGCTGCCTTCATCGACGCCGAGCACGCGCTGGACCCGATCTACGCCGCCAAGCTGGG
CGTGAACGTGGACGACCTGCTGCTGTCGCAGCCGGATACCGGTGAGCAGGCACTGGAGATCGCCGACATGCTGGTCCGTT
CGGGTTCGGTGGACATCCTTGTGGTCGACTCGGTCGCCGCACTGACCCCCAAGGCCGAAATCGAAGGCGAAATGGGTGAC
CAGCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGTGTGATGATGCCGGGCCAGAGCCCGGAAGTGACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGTCGTATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCAAGATCAAGGTCGTCAAGAACAAGCTGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
AGGCATCAGCCGCGAAGGCGAGCTGATCGACATGGGCGTGGAAGCCAAGCTGGTCGAGAAGGCCGGTGCCTGGTACAGCT
ACGGTGAAGAGCGCATTGGCCAGGGCAAGGACAACGCCCGCGGCTACCTGCGCGACAACCCGACCGTGGCTGCCAAGCTG
GAAGCCGAGCTGCGCGAAAAGTTCCAGCCGGCCGAAGCCGCCCGCGAGGAAGGCGACGACGACGGCGACGACGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

69.855

100

0.699
  recA Pseudomonas stutzeri DSM 10701

73.171

95.072

0.696
  recA Ralstonia pseudosolanacearum GMI1000

76.677

90.725

0.696
  recA Acinetobacter baumannii D1279779

72.256

95.072

0.687
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.086

94.493

0.681
  recA Vibrio cholerae strain A1552

72.086

94.493

0.681
  recA Glaesserella parasuis strain SC1401

65.116

99.71

0.649
  recA Neisseria gonorrhoeae MS11

68.098

94.493

0.643
  recA Neisseria gonorrhoeae MS11

68.098

94.493

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.098

94.493

0.643
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

96.812

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

62.09

97.101

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.688

92.754

0.6
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

94.203

0.594
  recA Helicobacter pylori strain NCTC11637

61.446

96.232

0.591
  recA Streptococcus mitis SK321

59.184

99.42

0.588
  recA Helicobacter pylori 26695

60.843

96.232

0.586
  recA Streptococcus mitis NCTC 12261

60.366

95.072

0.574
  recA Streptococcus pneumoniae Rx1

60.366

95.072

0.574
  recA Streptococcus pneumoniae D39

60.366

95.072

0.574
  recA Streptococcus pneumoniae R6

60.366

95.072

0.574
  recA Streptococcus pneumoniae TIGR4

60.366

95.072

0.574
  recA Streptococcus mutans UA159

60

95.652

0.574
  recA Streptococcus pyogenes NZ131

60

95.652

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.077

94.203

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.576

95.652

0.551

Multiple sequence alignment