Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QUE33_RS05575 Genome accession   NZ_AP027728
Coordinates   1090596..1091645 (-) Length   349 a.a.
NCBI ID   WP_286302396.1    Uniprot ID   -
Organism   Microbacterium suwonense strain NBRC 106310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1085596..1096645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE33_RS05550 (GCM10025863_11610) dapF 1085856..1086728 (-) 873 WP_286302389.1 diaminopimelate epimerase -
  QUE33_RS16050 - 1086738..1086875 (-) 138 WP_350226513.1 hypothetical protein -
  QUE33_RS05560 (GCM10025863_11630) miaA 1087299..1088224 (-) 926 Protein_1085 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  QUE33_RS05565 (GCM10025863_11640) miaB 1088233..1089783 (-) 1551 WP_286302391.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QUE33_RS05570 (GCM10025863_11650) - 1089868..1090593 (-) 726 WP_286302393.1 regulatory protein RecX -
  QUE33_RS05575 (GCM10025863_11660) recA 1090596..1091645 (-) 1050 WP_286302396.1 recombinase RecA Machinery gene
  QUE33_RS05580 (GCM10025863_11670) - 1091892..1092113 (-) 222 WP_286302398.1 DUF3046 domain-containing protein -
  QUE33_RS05585 (GCM10025863_11680) - 1092130..1092438 (-) 309 WP_286302401.1 helix-turn-helix transcriptional regulator -
  QUE33_RS05590 (GCM10025863_11690) - 1092610..1093110 (-) 501 WP_286302402.1 CinA family protein -
  QUE33_RS05595 (GCM10025863_11700) pgsA 1093107..1093682 (-) 576 WP_286302403.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QUE33_RS05600 - 1093682..1096437 (-) 2756 Protein_1093 DNA translocase FtsK -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37510.84 Da        Isoelectric Point: 5.5242

>NTDB_id=102162 QUE33_RS05575 WP_286302396.1 1090596..1091645(-) (recA) [Microbacterium suwonense strain NBRC 106310]
MPSTDDREKALDSALAHIERQFGKGSIMRLGSDERAPVEVIPTGSIALDSALGIGGLPRGRIIEIYGPESSGKTTLTLHA
IANAQRAGGIAAFIDAEHALDPEYARKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPEAEIKGEM
GDSHVGLQARLMSQALRKLTGGLNQTRTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGAEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGVGISREGSLIDFGVEHGIVKKSGSWYTYDGDQLGQGKENARTFLLKNEDIALAI
EDQIKQKLGIGMKAVPEAPADELAERRPA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=102162 QUE33_RS05575 WP_286302396.1 1090596..1091645(-) (recA) [Microbacterium suwonense strain NBRC 106310]
ATGCCATCCACCGACGACCGCGAGAAGGCCCTGGATTCCGCACTCGCACACATCGAGCGTCAGTTCGGCAAGGGATCGAT
CATGCGACTGGGCAGCGATGAGCGTGCTCCCGTCGAGGTCATCCCGACCGGATCGATCGCCCTGGACAGCGCCCTGGGCA
TCGGAGGTCTGCCGCGCGGCCGCATCATCGAGATCTACGGCCCCGAGTCGTCTGGAAAGACCACGCTCACGCTGCACGCC
ATCGCCAACGCTCAGCGGGCGGGTGGCATCGCGGCATTCATCGATGCGGAGCACGCACTCGATCCCGAGTACGCGCGAAA
GCTCGGCGTCGACATCGATCAGCTGCTGGTCTCTCAGCCCGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCA
TCCGATCCGGCGCGATCGACCTGGTCGTCATCGACTCGGTCGCGGCATTGGTCCCCGAGGCCGAGATCAAGGGCGAGATG
GGCGACTCGCACGTCGGTCTGCAGGCTCGACTGATGTCGCAGGCGCTGCGCAAGCTGACCGGCGGTCTGAACCAGACCAG
GACCACCGCGATCTTCATCAACCAGCTGCGTGAGAAGATCGGTGTCTTCTTCGGCTCGCCCGAGACCACCGCCGGTGGAA
AGGCGCTGAAGTTCTACGCCTCCGTTCGCCTGGACATCCGGCGCATCGAGACGCTCAAGGACGGTGCCGAGGCAGTCGGA
AACCGCACTCGCGTCAAGGTCGTCAAGAACAAGATGGCCCCGCCGTTCAAGCAGGCGGAGTTCGACATCCTCTACGGTGT
CGGAATCTCGCGTGAGGGCAGCCTGATCGACTTCGGCGTCGAGCACGGCATCGTGAAGAAGTCCGGCTCCTGGTACACCT
ACGACGGCGATCAGCTGGGACAGGGCAAGGAGAACGCCCGCACCTTCCTGTTGAAGAACGAGGACATCGCCCTCGCGATC
GAGGATCAGATCAAGCAGAAGCTGGGCATCGGCATGAAGGCTGTTCCCGAGGCGCCGGCTGACGAGCTCGCCGAGCGCCG
TCCGGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae strain FA1090

64.162

99.14

0.636
  recA Neisseria gonorrhoeae MS11

64.162

99.14

0.636
  recA Neisseria gonorrhoeae MS11

64.162

99.14

0.636
  recA Bacillus subtilis subsp. subtilis str. 168

68

93.123

0.633
  recA Acinetobacter baylyi ADP1

64.244

98.567

0.633
  recA Pseudomonas stutzeri DSM 10701

64.327

97.994

0.63
  recA Acinetobacter baumannii D1279779

66.975

92.837

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.049

92.837

0.613
  recA Vibrio cholerae strain A1552

66.049

92.837

0.613
  recA Ralstonia pseudosolanacearum GMI1000

67.732

89.685

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

62.985

95.989

0.605
  recA Helicobacter pylori 26695

60.632

99.713

0.605
  recA Helicobacter pylori strain NCTC11637

60.632

99.713

0.605
  recA Streptococcus mitis NCTC 12261

60.87

98.854

0.602
  recA Streptococcus mitis SK321

60.58

98.854

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

93.696

0.596
  recA Glaesserella parasuis strain SC1401

61.243

96.848

0.593
  recA Streptococcus pneumoniae TIGR4

62.918

94.269

0.593
  recA Streptococcus pneumoniae D39

62.918

94.269

0.593
  recA Streptococcus pneumoniae Rx1

62.918

94.269

0.593
  recA Streptococcus pneumoniae R6

62.918

94.269

0.593
  recA Lactococcus lactis subsp. cremoris KW2

62.006

94.269

0.585
  recA Streptococcus mutans UA159

61.515

94.556

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.725

94.842

0.576
  recA Streptococcus pyogenes NZ131

61.094

94.269

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

91.691

0.544

Multiple sequence alignment