Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AB1W24_RS11015 Genome accession   NZ_CP160457
Coordinates   2408706..2409767 (-) Length   353 a.a.
NCBI ID   WP_012417970.1    Uniprot ID   Q2KYE8
Organism   Bordetella avium strain 4094     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2403706..2414767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1W24_RS10995 (AB1W24_10995) - 2403949..2404551 (-) 603 WP_012417966.1 DUF2889 domain-containing protein -
  AB1W24_RS11000 (AB1W24_11000) metE 2404769..2407069 (-) 2301 WP_114852630.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AB1W24_RS11005 (AB1W24_11005) - 2407209..2408129 (+) 921 WP_012417968.1 LysR family transcriptional regulator -
  AB1W24_RS11010 (AB1W24_11010) recX 2408142..2408681 (-) 540 WP_114852629.1 recombination regulator RecX -
  AB1W24_RS11015 (AB1W24_11015) recA 2408706..2409767 (-) 1062 WP_012417970.1 recombinase RecA Machinery gene
  AB1W24_RS11020 (AB1W24_11020) - 2410100..2410795 (+) 696 WP_114852628.1 response regulator transcription factor -
  AB1W24_RS11025 (AB1W24_11025) - 2410899..2412284 (+) 1386 WP_012417972.1 sensor histidine kinase -
  AB1W24_RS11030 (AB1W24_11030) - 2412464..2414134 (+) 1671 WP_012417973.1 MFS transporter -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37879.25 Da        Isoelectric Point: 5.0661

>NTDB_id=1021301 AB1W24_RS11015 WP_012417970.1 2408706..2409767(-) (recA) [Bordetella avium strain 4094]
MDEKTSKAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGKT
TLTLQVIAEMQKVGGTCAFVDAEHALDVQYASKLGVNLGDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPKA
EIEGEMGDALPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIKK
GDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGAGISREGEIIDLGVAANVIEKSGAWYSYSGNRIGQGKDNVREYLKENR
AMAIEIENKIRDNQGIVARAAEFAPTAEESAED

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1021301 AB1W24_RS11015 WP_012417970.1 2408706..2409767(-) (recA) [Bordetella avium strain 4094]
ATGGACGAAAAAACCAGCAAGGCTGCGTCGGAAAAAGCTAAAGCCCTGGCTGCCGCGCTTTCCCAGATCGAAAAGCAGTT
CGGCAAAGGCTCGATCATGCGCTACGGCGATAACGAGGTTGAGCACGATATCCAGGTTGTTTCGACCGGTTCGCTGGGCT
TGGACATCGCGCTGGGTGTCGGCGGGCTGCCGCGTGGCCGCGTGGTTGAAATCTATGGTCCGGAATCGTCGGGTAAAACG
ACGCTCACCCTGCAGGTCATCGCCGAAATGCAGAAAGTGGGCGGCACCTGCGCCTTCGTCGACGCCGAGCATGCGCTCGA
TGTCCAGTACGCTTCCAAGCTGGGCGTCAATCTCGGCGATCTCCTGATCTCCCAGCCCGACACGGGCGAGCAGGCGCTCG
AGATCACCGACGCGCTGGTGCGTTCTGGCTCTGTTGATCTGATCGTGATTGACTCTGTCGCCGCGCTGGTGCCGAAGGCC
GAAATCGAAGGTGAGATGGGCGATGCCCTGCCTGGTCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAACTGACCGC
CACGATCAAGCGCACCAATTGCATGGTGATCTTCATCAATCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCTG
AAACCACCACCGGCGGCAACGCACTGAAGTTTTATTCTTCCGTGCGTTTGGACATCCGTCGTATCGGTTCCATCAAGAAA
GGCGACGAGGTGGTCGGCAACGAAACGCGCGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGAGTT
CGACATCATGTACGGCGCCGGTATTTCTCGCGAAGGCGAAATCATCGATCTGGGTGTGGCGGCCAACGTGATTGAAAAAT
CCGGTGCCTGGTATAGCTACAGCGGTAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTCAAGGAAAACCGT
GCCATGGCCATCGAGATCGAAAACAAGATCCGCGATAACCAAGGCATCGTAGCCCGTGCGGCGGAGTTCGCTCCGACGGC
CGAAGAAAGCGCGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2KYE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.766

99.433

0.813
  recA Pseudomonas stutzeri DSM 10701

72.141

96.601

0.697
  recA Neisseria gonorrhoeae MS11

71.856

94.618

0.68
  recA Neisseria gonorrhoeae MS11

71.856

94.618

0.68
  recA Neisseria gonorrhoeae strain FA1090

71.856

94.618

0.68
  recA Acinetobacter baylyi ADP1

69.006

96.884

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.897

90.935

0.663
  recA Vibrio cholerae strain A1552

72.897

90.935

0.663
  recA Acinetobacter baumannii D1279779

72.586

90.935

0.66
  recA Glaesserella parasuis strain SC1401

71.739

91.218

0.654
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.97

94.618

0.615
  recA Latilactobacillus sakei subsp. sakei 23K

62.865

96.884

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.031

92.351

0.601
  recA Helicobacter pylori 26695

61.047

97.45

0.595
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

92.635

0.595
  recA Helicobacter pylori strain NCTC11637

60.756

97.45

0.592
  recA Streptococcus pneumoniae R6

58.358

96.601

0.564
  recA Streptococcus pneumoniae TIGR4

58.358

96.601

0.564
  recA Streptococcus mitis SK321

58.358

96.601

0.564
  recA Streptococcus mitis NCTC 12261

58.358

96.601

0.564
  recA Streptococcus pneumoniae Rx1

58.358

96.601

0.564
  recA Streptococcus pneumoniae D39

58.358

96.601

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

91.501

0.561
  recA Streptococcus mutans UA159

57.941

96.317

0.558
  recA Streptococcus pyogenes NZ131

58.683

94.618

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.478

96.601

0.555

Multiple sequence alignment