Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABZP31_RS05925 Genome accession   NZ_CP160437
Coordinates   1294607..1295653 (-) Length   348 a.a.
NCBI ID   WP_248134222.1    Uniprot ID   -
Organism   Acinetobacter sp. FL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1289607..1300653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP31_RS05890 (ABZP31_05890) - 1289877..1290374 (+) 498 WP_005025675.1 OmpH family outer membrane protein -
  ABZP31_RS05895 (ABZP31_05895) lpxD 1290378..1291448 (+) 1071 WP_248134223.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  ABZP31_RS05900 (ABZP31_05900) fabZ 1291455..1291931 (+) 477 WP_005405310.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABZP31_RS05905 (ABZP31_05905) lpxA 1291939..1292727 (+) 789 WP_005405550.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  ABZP31_RS05910 (ABZP31_05910) - 1292799..1293626 (-) 828 WP_227499279.1 YbgF trimerization domain-containing protein -
  ABZP31_RS05920 (ABZP31_05920) - 1294068..1294553 (-) 486 WP_005405657.1 regulatory protein RecX -
  ABZP31_RS05925 (ABZP31_05925) recA 1294607..1295653 (-) 1047 WP_248134222.1 recombinase RecA Machinery gene
  ABZP31_RS05930 (ABZP31_05930) - 1295802..1296242 (-) 441 WP_034679911.1 S4 domain-containing protein -
  ABZP31_RS05935 (ABZP31_05935) - 1296226..1296912 (-) 687 WP_248134220.1 HAD-IA family hydrolase -
  ABZP31_RS05940 (ABZP31_05940) - 1297670..1298518 (+) 849 WP_138000675.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ABZP31_RS05945 (ABZP31_05945) - 1298580..1299326 (+) 747 WP_005014586.1 phosphoglycerate mutase family protein -
  ABZP31_RS05950 (ABZP31_05950) rpsT 1299552..1299821 (-) 270 WP_005014584.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37737.17 Da        Isoelectric Point: 4.9415

>NTDB_id=1021128 ABZP31_RS05925 WP_248134222.1 1294607..1295653(-) (recA) [Acinetobacter sp. FL]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIIQKAGAWYSYQGNKIGQGKNNVIRHLEENSELAVEVER
LIREQLLTTNNAPVAEDEAEEVPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1021128 ABZP31_RS05925 WP_248134222.1 1294607..1295653(-) (recA) [Acinetobacter sp. FL]
ATGGATGAGAACAAAAGCAAAGCGCTCAATGCCGCGTTAAGCCAAATTGAGAAACAGTTTGGTAAAAATACGGTAATGCG
CTTGGGTGATAATACCGTGCAGGCAGTAGAAGCTGTATCAACCGGTTCTTTAACATTAGATATTGCGCTGGGTATTGGCG
GTTTGCCTAAGGGCCGTATTGTTGAAATTTACGGTCCTGAGTCCTCAGGTAAAACCACTATGACATTGCAGGCAATTGCG
CAGTGTCAGAAGGCTGGTGGTACTTGTGCGTTTATTGATGCAGAGCATGCACTTGACCCGCAGTATGCACGTAAACTTGG
CGTAGATATTGATAACCTGCTGGTTTCCCAGCCAGATAATGGTGAACAGGCATTAGAAATTGCAGACATGCTGGTACGCT
CGGGAGCAATTGACCTGATCGTAGTCGACTCCGTTGCTGCCTTGACCCCACGTGCCGAGATTGAAGGCGAAATGGGTGAT
TCACATATGGGGCTGCAAGCTCGACTGATGAGCCAGGCACTGCGTAAGATTACCGGTAATGCTAAGCGTTCTAACTGTAT
GGTAATCTTCATTAACCAGATTCGTATGAAAATCGGTGTAATGTTTGGTAGTCCTGAGACTACAACTGGTGGTAATGCAT
TAAAATTCTATGCATCAGTCCGTCTGGATATTCGCCGTATCGGTCAGGTAAAAGAAGGCGATGAAATTATTGGCTCTGAA
ACCAAAGTTAAAGTCGTCAAGAATAAAATGGCGCCTCCATTTAAAGAAGCACTATTTCAGATTCTTTATGGCAAAGGGGT
TAACCATCTCGGCGAGTTGATTGATTTAGCTGTTCAGCAAGAAATCATCCAGAAAGCTGGTGCATGGTACTCTTACCAAG
GTAATAAAATTGGCCAAGGCAAGAATAATGTGATTCGTCATCTGGAAGAAAATTCGGAGCTGGCAGTAGAAGTTGAGCGT
CTTATTCGTGAGCAGCTCTTAACTACTAATAATGCGCCGGTGGCAGAAGATGAAGCAGAAGAAGTCCCGGACTTCCTAGA
AAGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.404

100

0.917
  recA Acinetobacter baumannii D1279779

91.329

99.425

0.908
  recA Pseudomonas stutzeri DSM 10701

73.837

98.851

0.73
  recA Vibrio cholerae strain A1552

72.81

95.115

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.81

95.115

0.693
  recA Glaesserella parasuis strain SC1401

71.515

94.828

0.678
  recA Ralstonia pseudosolanacearum GMI1000

70.642

93.966

0.664
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae MS11

68.519

93.103

0.638
  recA Neisseria gonorrhoeae strain FA1090

68.519

93.103

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

95.115

0.615
  recA Helicobacter pylori strain NCTC11637

61.628

98.851

0.609
  recA Helicobacter pylori 26695

61.337

98.851

0.606
  recA Streptococcus mutans UA159

60.756

98.851

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

93.966

0.598
  recA Streptococcus mitis NCTC 12261

60

99.138

0.595
  recA Streptococcus mitis SK321

59.942

98.276

0.589
  recA Streptococcus pneumoniae D39

59.593

98.851

0.589
  recA Streptococcus pneumoniae Rx1

59.593

98.851

0.589
  recA Streptococcus pneumoniae R6

59.593

98.851

0.589
  recA Streptococcus pneumoniae TIGR4

59.593

98.851

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

93.678

0.583
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

60.423

95.115

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

97.701

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552

Multiple sequence alignment