Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABZP20_RS02495 Genome accession   NZ_CP160433
Coordinates   535170..536228 (+) Length   352 a.a.
NCBI ID   WP_004635402.1    Uniprot ID   -
Organism   Ralstonia sp. CP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 530170..541228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZP20_RS02475 (ABZP20_02475) - 531636..532286 (+) 651 WP_012434929.1 3'-5' exonuclease -
  ABZP20_RS02480 (ABZP20_02480) - 532295..532609 (-) 315 WP_012434930.1 sodium/substrate symporter small subunit -
  ABZP20_RS02485 (ABZP20_02485) - 532606..534201 (-) 1596 WP_012434931.1 sensor histidine kinase -
  ABZP20_RS02490 (ABZP20_02490) - 534194..534904 (-) 711 WP_004635405.1 response regulator transcription factor -
  ABZP20_RS02495 (ABZP20_02495) recA 535170..536228 (+) 1059 WP_004635402.1 recombinase RecA Machinery gene
  ABZP20_RS02500 (ABZP20_02500) recX 536339..536818 (+) 480 WP_004635401.1 recombination regulator RecX -
  ABZP20_RS02505 (ABZP20_02505) - 537105..537731 (+) 627 WP_012434932.1 DUF2889 domain-containing protein -
  ABZP20_RS02510 (ABZP20_02510) sucC 537798..538964 (+) 1167 WP_012434933.1 ADP-forming succinate--CoA ligase subunit beta -
  ABZP20_RS02515 (ABZP20_02515) sucD 539053..539934 (+) 882 WP_012434934.1 succinate--CoA ligase subunit alpha -
  ABZP20_RS02520 (ABZP20_02520) - 540088..540783 (+) 696 WP_012434935.1 TerC family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37566.18 Da        Isoelectric Point: 4.8224

>NTDB_id=1021086 ABZP20_RS02495 WP_004635402.1 535170..536228(+) (recA) [Ralstonia sp. CP]
MEDGKKAATMSAEKQKALAAALAQIEKQFGKGSIMKMGDAEVEPVQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSGK
TTLTLQVVAEMQKLGGTCAFIDAEHALDVTYADKIGVSVPDLLISQPDTGEQALEIADALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDALPGLQARLMSQALRKLTGTIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIK
RGDDVVGNETKVKVVKNKVAPPFREAIFDILYGQGVSREGEIIDLGVEAKVVEKSGAWYSYGGERIGQGRDNCREYLREN
PDLAREIENKVREQLGVTPMGAVAVAEEVGEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1021086 ABZP20_RS02495 WP_004635402.1 535170..536228(+) (recA) [Ralstonia sp. CP]
ATGGAAGACGGTAAGAAGGCAGCCACGATGAGCGCAGAAAAGCAGAAGGCGCTGGCTGCCGCGCTCGCGCAGATCGAAAA
GCAGTTCGGCAAGGGCTCCATCATGAAGATGGGCGACGCCGAGGTCGAGCCGGTCCAGGTCGTGTCGACGGGTTCGCTGG
GGCTGGATGTGGCGCTGGGCGTTGGTGGCCTGCCGCGCGGCCGTGTGATTGAAATCTACGGTCCGGAATCGTCGGGCAAG
ACCACGCTGACACTGCAAGTGGTTGCCGAGATGCAGAAGCTGGGCGGCACTTGCGCCTTCATCGACGCAGAACATGCGCT
TGACGTCACTTATGCCGATAAGATTGGCGTAAGTGTCCCGGACCTGCTGATCTCCCAGCCGGACACGGGTGAACAGGCTT
TGGAAATTGCCGACGCGCTGGTGCGCTCGGGCTCGGTTGATCTGATCGTCATCGACTCGGTGGCCGCTCTGGTACCGAAG
GCTGAAATTGAAGGCGAAATGGGCGATGCGTTGCCCGGCCTGCAGGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTGAC
CGGCACCATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTGGTTCGC
CGGAAACCACCACGGGCGGTAACGCGCTCAAGTTCTACGCTTCGGTGCGTCTGGACATCCGCCGTATCGGCTCAATCAAG
CGGGGCGACGACGTGGTCGGCAACGAAACCAAGGTCAAGGTCGTCAAGAACAAGGTGGCGCCGCCGTTCCGCGAAGCCAT
CTTCGACATCCTCTACGGTCAGGGCGTATCGCGCGAGGGCGAGATCATCGACCTGGGCGTGGAAGCCAAGGTGGTCGAGA
AGTCTGGCGCCTGGTACAGCTACGGCGGCGAACGCATCGGCCAGGGCCGCGACAACTGCCGCGAATACCTGCGCGAGAAC
CCCGACCTTGCCCGTGAGATCGAGAACAAGGTCCGCGAGCAACTGGGCGTGACGCCGATGGGCGCCGTCGCAGTGGCCGA
GGAAGTCGGAGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

94.886

100

0.949
  recA Pseudomonas stutzeri DSM 10701

70.64

97.727

0.69
  recA Acinetobacter baylyi ADP1

69.971

97.443

0.682
  recA Acinetobacter baumannii D1279779

70.588

96.591

0.682
  recA Neisseria gonorrhoeae MS11

72.644

93.466

0.679
  recA Neisseria gonorrhoeae strain FA1090

72.644

93.466

0.679
  recA Neisseria gonorrhoeae MS11

72.644

93.466

0.679
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.527

96.023

0.668
  recA Vibrio cholerae strain A1552

69.527

96.023

0.668
  recA Glaesserella parasuis strain SC1401

68.807

92.898

0.639
  recA Bacillus subtilis subsp. subtilis str. 168

65.06

94.318

0.614
  recA Latilactobacillus sakei subsp. sakei 23K

65.031

92.614

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.438

93.466

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.855

94.318

0.602
  recA Helicobacter pylori 26695

64.923

92.33

0.599
  recA Helicobacter pylori strain NCTC11637

64.615

92.33

0.597
  recA Lactococcus lactis subsp. cremoris KW2

60.177

96.307

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.35

92.614

0.568
  recA Streptococcus pyogenes NZ131

57.849

97.727

0.565
  recA Streptococcus mitis NCTC 12261

60.303

93.75

0.565
  recA Streptococcus mitis SK321

60.303

93.75

0.565
  recA Streptococcus pneumoniae R6

60

93.75

0.563
  recA Streptococcus pneumoniae TIGR4

60

93.75

0.563
  recA Streptococcus pneumoniae Rx1

60

93.75

0.563
  recA Streptococcus pneumoniae D39

60

93.75

0.563
  recA Streptococcus mutans UA159

58.663

93.466

0.548

Multiple sequence alignment