Detailed information NTG1020898

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: ABZN20_RS16940
• Genome accession: NZ_CP160399
• Coordinates: 3471949..3472992 (+)
• Length: 347 a.a.
• NCBI ID: WP_218805606.1
• Uniprot ID: -
• Organism: Methylococcus sp. ANG
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	3470251..3471642	3471949..3472992	flank	307

Gene organization within MGE regions

Location: 3470251..3472992

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABZN20_RS16935 (ABZN20_16935)	-	3470251..3471642 (+)	1392	WP_367025178.1	IS1380 family transposase	-
ABZN20_RS16940 (ABZN20_16940)	recA	3471949..3472992 (+)	1044	WP_218805606.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 347 a.a.
• Molecular weight: 36961.18 Da
• Isoelectric Point: 5.5074

>NTDB_id=1020898 ABZN20_RS16940 WP_218805606.1 3471949..3472992(+) (recA) [Methylococcus sp. ANG]
MDENKRKALGAALSQIEKQFGKGSVMRMGDVAAVRDIDVVSTGSLALDIALGCGGLPRGRIVEIYGPESSGKTTLTLEVI
AQAQKTGGVAAFVDAEHALDPVYAEKIGVNLDELLVSQPDTGEQALEIADMLVRSGGVDVVVIDSVAALTPKAELEGEMG
DSHMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRSGAIKNGDEVIGN
ETRVKVVKNKVAPPFRVADFEILYGEGVSREGELIDLGVSHDIVQKSGSWYSYGGDRIGQGKDNVRIYLKEHPEVAAAIE
AAVREKALAGFQHSAPAGRAAVEESGF

Nucleotide

• Length: 1044 bp

>NTDB_id=1020898 ABZN20_RS16940 WP_218805606.1 3471949..3472992(+) (recA) [Methylococcus sp. ANG]
ATGGACGAGAACAAACGCAAGGCCTTGGGTGCCGCTCTTTCCCAGATCGAGAAACAGTTCGGCAAGGGATCGGTGATGCG
CATGGGCGATGTCGCGGCGGTCCGGGACATCGATGTGGTGTCCACCGGCTCGCTGGCGCTGGACATCGCGTTGGGCTGCG
GCGGTTTGCCGCGCGGCCGCATCGTCGAGATTTACGGCCCGGAATCCTCGGGCAAAACCACGTTGACCCTGGAGGTCATC
GCCCAGGCGCAGAAGACCGGCGGCGTGGCGGCGTTCGTGGACGCGGAGCATGCGCTGGACCCGGTCTACGCCGAAAAGAT
CGGGGTGAACCTCGACGAGCTCCTGGTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGC
GTTCCGGCGGCGTGGACGTGGTGGTGATCGACTCGGTGGCGGCGCTGACGCCCAAGGCCGAACTCGAAGGCGAGATGGGC
GATTCCCACATGGGCCTGCAGGCCCGGCTGATGTCGCAGGCTTTGCGCAAGCTGACCGCCAACATCAAGCGCTCCAATAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAGACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGTTCGGGCGCGATCAAGAACGGCGACGAGGTGATCGGGAAC
GAAACCCGCGTCAAGGTCGTCAAGAACAAGGTGGCCCCGCCGTTCCGCGTCGCCGATTTCGAGATTCTGTACGGCGAGGG
CGTCTCGCGAGAGGGCGAGCTGATCGACCTCGGCGTGAGTCACGACATCGTGCAGAAGTCCGGCTCCTGGTACAGCTACG
GCGGCGACCGCATCGGCCAGGGCAAGGACAACGTCCGGATCTATCTCAAGGAGCATCCGGAGGTTGCGGCCGCCATCGAG
GCGGCCGTCCGCGAGAAGGCGCTGGCCGGGTTTCAGCACTCGGCGCCTGCCGGGCGCGCGGCGGTGGAAGAGAGCGGGTT
CTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae O1 biovar El Tor strain E7946	75	94.524	0.709
recA	Vibrio cholerae strain A1552	75	94.524	0.709
recA	Pseudomonas stutzeri DSM 10701	74.695	94.524	0.706
recA	Acinetobacter baylyi ADP1	74.695	94.524	0.706
recA	Neisseria gonorrhoeae MS11	71.893	97.406	0.7
recA	Neisseria gonorrhoeae MS11	71.893	97.406	0.7
recA	Neisseria gonorrhoeae strain FA1090	71.893	97.406	0.7
recA	Acinetobacter baumannii D1279779	73.252	94.813	0.695
recA	Ralstonia pseudosolanacearum GMI1000	76.452	89.337	0.683
recA	Glaesserella parasuis strain SC1401	72.36	92.795	0.671
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	66.066	95.965	0.634
recA	Bacillus subtilis subsp. subtilis str. 168	66.77	92.795	0.62
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.538	93.66	0.614
recA	Streptococcus pyogenes NZ131	62.805	94.524	0.594
recA	Helicobacter pylori strain NCTC11637	63.19	93.948	0.594
recA	Latilactobacillus sakei subsp. sakei 23K	63.665	92.795	0.591
recA	Streptococcus pneumoniae Rx1	62.883	93.948	0.591
recA	Streptococcus pneumoniae D39	62.883	93.948	0.591
recA	Streptococcus pneumoniae R6	62.883	93.948	0.591
recA	Streptococcus pneumoniae TIGR4	62.883	93.948	0.591
recA	Helicobacter pylori 26695	62.883	93.948	0.591
recA	Streptococcus mitis SK321	62.963	93.372	0.588
recA	Streptococcus mitis NCTC 12261	62.346	93.372	0.582
recA	Streptococcus mutans UA159	61.963	93.948	0.582
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.725	95.389	0.579
recA	Lactococcus lactis subsp. cremoris KW2	61.42	93.372	0.573