Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ABV589_RS21105 | Genome accession | NZ_CP160398 |
| Coordinates | 4680279..4681337 (+) | Length | 352 a.a. |
| NCBI ID | WP_003222269.1 | Uniprot ID | J2PVU0 |
| Organism | Pseudomonas sp. HOU2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 4634841..4687135 | 4680279..4681337 | within | 0 |
Gene organization within MGE regions
Location: 4634841..4687135
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABV589_RS20850 (ABV589_20850) | - | 4634841..4635722 (+) | 882 | WP_027611047.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| ABV589_RS20855 (ABV589_20855) | rpoS | 4635828..4636838 (+) | 1011 | WP_007964304.1 | RNA polymerase sigma factor RpoS | - |
| ABV589_RS20860 (ABV589_20860) | fdxA | 4637452..4637775 (-) | 324 | WP_007908827.1 | ferredoxin FdxA | - |
| ABV589_RS20865 (ABV589_20865) | mutS | 4637939..4640521 (-) | 2583 | WP_367083367.1 | DNA mismatch repair protein MutS | - |
| ABV589_RS20870 (ABV589_20870) | - | 4640731..4641465 (+) | 735 | WP_103520488.1 | XRE family transcriptional regulator | - |
| ABV589_RS20875 (ABV589_20875) | - | 4642020..4642442 (+) | 423 | WP_367083369.1 | tail fiber assembly protein | - |
| ABV589_RS20880 (ABV589_20880) | - | 4642587..4642928 (+) | 342 | WP_003222183.1 | phage holin family protein | - |
| ABV589_RS20885 (ABV589_20885) | - | 4643001..4643522 (+) | 522 | WP_367083371.1 | hypothetical protein | - |
| ABV589_RS20890 (ABV589_20890) | - | 4643526..4644134 (+) | 609 | WP_367083373.1 | phage baseplate assembly protein V | - |
| ABV589_RS20895 (ABV589_20895) | - | 4644149..4644481 (+) | 333 | WP_003222189.1 | phage baseplate protein | - |
| ABV589_RS20900 (ABV589_20900) | - | 4644478..4645473 (+) | 996 | WP_367083375.1 | baseplate J/gp47 family protein | - |
| ABV589_RS20905 (ABV589_20905) | - | 4645470..4646105 (+) | 636 | WP_367083377.1 | phage tail protein I | - |
| ABV589_RS20910 (ABV589_20910) | - | 4646106..4648565 (+) | 2460 | WP_367083378.1 | phage tail protein | - |
| ABV589_RS20915 (ABV589_20915) | - | 4648574..4649122 (+) | 549 | WP_367083380.1 | DUF4376 domain-containing protein | - |
| ABV589_RS20920 (ABV589_20920) | - | 4649159..4650718 (-) | 1560 | WP_367083382.1 | hypothetical protein | - |
| ABV589_RS20925 (ABV589_20925) | - | 4650730..4652226 (-) | 1497 | WP_367083384.1 | MBOAT family protein | - |
| ABV589_RS20930 (ABV589_20930) | - | 4652509..4652721 (+) | 213 | WP_367083385.1 | hypothetical protein | - |
| ABV589_RS20935 (ABV589_20935) | - | 4652724..4653890 (+) | 1167 | WP_367083387.1 | phage tail protein | - |
| ABV589_RS20940 (ABV589_20940) | - | 4653890..4654396 (+) | 507 | WP_007964324.1 | phage major tail tube protein | - |
| ABV589_RS20945 (ABV589_20945) | - | 4654548..4655129 (+) | 582 | WP_367083389.1 | phage tail assembly protein | - |
| ABV589_RS20950 (ABV589_20950) | - | 4655258..4657732 (+) | 2475 | WP_367083391.1 | phage tail tape measure protein | - |
| ABV589_RS20955 (ABV589_20955) | - | 4657729..4658112 (+) | 384 | WP_007964328.1 | phage tail protein | - |
| ABV589_RS20960 (ABV589_20960) | - | 4658105..4658317 (+) | 213 | WP_007964330.1 | tail protein X | - |
| ABV589_RS20965 (ABV589_20965) | - | 4658327..4659355 (+) | 1029 | WP_367083393.1 | phage late control D family protein | - |
| ABV589_RS20970 (ABV589_20970) | - | 4659515..4660099 (+) | 585 | WP_367083394.1 | hypothetical protein | - |
| ABV589_RS20975 (ABV589_20975) | - | 4660096..4660275 (+) | 180 | WP_027611066.1 | DUF2635 domain-containing protein | - |
| ABV589_RS20980 (ABV589_20980) | - | 4660275..4661771 (+) | 1497 | WP_367083396.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| ABV589_RS20985 (ABV589_20985) | - | 4661839..4662186 (+) | 348 | WP_007964335.1 | phage tail tube protein | - |
| ABV589_RS20990 (ABV589_20990) | - | 4662183..4662479 (+) | 297 | WP_003222226.1 | phage tail assembly protein | - |
| ABV589_RS20995 (ABV589_20995) | - | 4662610..4664508 (+) | 1899 | WP_367083399.1 | phage tail protein | - |
| ABV589_RS21000 (ABV589_21000) | - | 4664495..4665730 (+) | 1236 | WP_367083401.1 | DNA circularization N-terminal domain-containing protein | - |
| ABV589_RS21005 (ABV589_21005) | - | 4665734..4666777 (+) | 1044 | WP_367083403.1 | phage baseplate assembly protein | - |
| ABV589_RS21010 (ABV589_21010) | - | 4666937..4667446 (+) | 510 | WP_007964341.1 | phage baseplate assembly protein V | - |
| ABV589_RS21015 (ABV589_21015) | - | 4667446..4667844 (+) | 399 | WP_007964342.1 | phage GP46 family protein | - |
| ABV589_RS21020 (ABV589_21020) | - | 4667834..4668880 (+) | 1047 | WP_367083404.1 | baseplate J/gp47 family protein | - |
| ABV589_RS21025 (ABV589_21025) | - | 4668868..4669467 (+) | 600 | WP_007964344.1 | putative phage tail protein | - |
| ABV589_RS21030 (ABV589_21030) | - | 4669482..4670360 (+) | 879 | WP_367083406.1 | phage tail protein | - |
| ABV589_RS21035 (ABV589_21035) | - | 4670378..4670797 (+) | 420 | WP_367083408.1 | tail fiber assembly protein | - |
| ABV589_RS21040 (ABV589_21040) | - | 4670869..4672020 (+) | 1152 | WP_367083410.1 | phage tail protein | - |
| ABV589_RS21045 (ABV589_21045) | - | 4672017..4672532 (+) | 516 | WP_367083411.1 | phage tail protein | - |
| ABV589_RS21050 (ABV589_21050) | - | 4672669..4673766 (+) | 1098 | WP_367083413.1 | phage tail protein | - |
| ABV589_RS21055 (ABV589_21055) | - | 4673774..4674340 (+) | 567 | WP_367083414.1 | tail fiber assembly protein | - |
| ABV589_RS21060 (ABV589_21060) | - | 4674363..4675289 (+) | 927 | WP_367083416.1 | hypothetical protein | - |
| ABV589_RS21065 (ABV589_21065) | - | 4675289..4675762 (+) | 474 | WP_367083418.1 | phage tail assembly chaperone | - |
| ABV589_RS21070 (ABV589_21070) | - | 4675762..4676649 (+) | 888 | WP_367083419.1 | phage tail protein | - |
| ABV589_RS21075 (ABV589_21075) | - | 4676650..4677096 (+) | 447 | WP_367083421.1 | phage tail assembly chaperone | - |
| ABV589_RS21080 (ABV589_21080) | - | 4677115..4678275 (+) | 1161 | WP_367083423.1 | hypothetical protein | - |
| ABV589_RS21085 (ABV589_21085) | - | 4678275..4678529 (+) | 255 | WP_367083424.1 | hypothetical protein | - |
| ABV589_RS21090 (ABV589_21090) | - | 4678563..4679129 (+) | 567 | WP_027611082.1 | glycoside hydrolase family 19 protein | - |
| ABV589_RS21095 (ABV589_21095) | - | 4679108..4679626 (+) | 519 | WP_367083426.1 | lysis system i-spanin subunit Rz | - |
| ABV589_RS21100 (ABV589_21100) | - | 4679695..4680195 (+) | 501 | WP_367083428.1 | CinA family protein | - |
| ABV589_RS21105 (ABV589_21105) | recA | 4680279..4681337 (+) | 1059 | WP_003222269.1 | recombinase RecA | Machinery gene |
| ABV589_RS21110 (ABV589_21110) | recX | 4681346..4681816 (+) | 471 | WP_003222270.1 | recombination regulator RecX | - |
| ABV589_RS21115 (ABV589_21115) | - | 4681872..4682990 (-) | 1119 | WP_367083430.1 | TIGR00730 family Rossman fold protein | - |
| ABV589_RS21120 (ABV589_21120) | - | 4683343..4683537 (+) | 195 | WP_007964369.1 | hypothetical protein | - |
| ABV589_RS21125 (ABV589_21125) | - | 4683538..4683963 (-) | 426 | WP_007964371.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| ABV589_RS21130 (ABV589_21130) | - | 4684153..4684899 (+) | 747 | WP_367083432.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| ABV589_RS21135 (ABV589_21135) | erdR | 4685125..4685775 (+) | 651 | WP_367083434.1 | response regulator transcription factor ErdR | - |
| ABV589_RS21140 (ABV589_21140) | - | 4685850..4686212 (+) | 363 | WP_003222276.1 | diacylglycerol kinase | - |
| ABV589_RS21145 (ABV589_21145) | - | 4686209..4687135 (-) | 927 | WP_007964377.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37447.98 Da Isoelectric Point: 5.3111
>NTDB_id=1020875 ABV589_RS21105 WP_003222269.1 4680279..4681337(+) (recA) [Pseudomonas sp. HOU2]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEVAAKLEK
QLRDKLLSPAVIADSKASAVKETEDDLADADI
Nucleotide
Download Length: 1059 bp
>NTDB_id=1020875 ABV589_RS21105 WP_003222269.1 4680279..4681337(+) (recA) [Pseudomonas sp. HOU2]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCGCAAAAAGCCGGCGCGACCTGCGCTTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTATGCTGGCAAACTCGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACTGGCGAACAGGCACTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTAGCCGCTCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGGGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTCGTCGAGAAATCCGGCGCCTGGTACGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTCGCTGCCAAGCTCGAGAAG
CAGCTGCGTGACAAACTGCTGTCGCCAGCGGTGATCGCGGACTCCAAGGCCTCTGCGGTCAAAGAGACCGAAGACGACCT
GGCTGACGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATCGCACTCGGCATCGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACACTGACACTGTCCGTGATCGCC
CAGGCGCAAAAAGCCGGCGCGACCTGCGCTTTCGTCGACGCCGAACACGCCCTCGACCCTGAGTATGCTGGCAAACTCGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACTGGCGAACAGGCACTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTAGCCGCTCTGGTACCGAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCCTCGGTCCGTCTCGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTCGGCAGCGAA
ACCCGGGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGCGAGATGATCGACCTGGGCGTGCTGCACGGCTTCGTCGAGAAATCCGGCGCCTGGTACGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGAAGTCGCTGCCAAGCTCGAGAAG
CAGCTGCGTGACAAACTGCTGTCGCCAGCGGTGATCGCGGACTCCAAGGCCTCTGCGGTCAAAGAGACCGAAGACGACCT
GGCTGACGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.