Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABUE11_RS17210 Genome accession   NZ_CP160388
Coordinates   3660449..3661537 (-) Length   362 a.a.
NCBI ID   WP_367066654.1    Uniprot ID   -
Organism   Oryzisolibacter sp. LB2S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3655449..3666537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUE11_RS17195 secF 3656356..3657309 (+) 954 WP_367066648.1 protein translocase subunit SecF -
  ABUE11_RS17200 - 3657364..3659658 (+) 2295 WP_367066650.1 DUF1631 family protein -
  ABUE11_RS17205 recX 3659714..3660172 (-) 459 WP_367066652.1 recombination regulator RecX -
  ABUE11_RS17210 recA 3660449..3661537 (-) 1089 WP_367066654.1 recombinase RecA Machinery gene
  ABUE11_RS17215 - 3661679..3662161 (+) 483 WP_367066655.1 helix-turn-helix domain-containing protein -
  ABUE11_RS17220 - 3662162..3662635 (-) 474 WP_367066656.1 winged helix-turn-helix transcriptional regulator -
  ABUE11_RS17225 - 3662762..3664072 (+) 1311 WP_367066657.1 D-amino acid dehydrogenase -
  ABUE11_RS17230 - 3664200..3664874 (+) 675 WP_367066658.1 response regulator transcription factor -
  ABUE11_RS17235 - 3664941..3666392 (+) 1452 WP_367066659.1 sensor histidine kinase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38755.37 Da        Isoelectric Point: 5.0885

>NTDB_id=1020768 ABUE11_RS17210 WP_367066654.1 3660449..3661537(-) (recA) [Oryzisolibacter sp. LB2S]
MDTTVKTADQSEKAKALQAALAQIEKQFGKGTIMRLGEGEQIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGK
TTLTLQVIAEMQKLGGTCAFIDAEHALDTQYAQKLGVNLNDILISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALVPK
AEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
KGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARILEKSGAWYAYNGEKIGQGRDNAREFLREN
PDLAREIENKVRESLGIALLPVATAGDAAEDKPGRGKKAAEA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=1020768 ABUE11_RS17210 WP_367066654.1 3660449..3661537(-) (recA) [Oryzisolibacter sp. LB2S]
ATGGACACCACCGTCAAGACCGCCGACCAGAGCGAAAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCAGATCGAGAAGCA
GTTCGGCAAGGGCACCATCATGCGCCTGGGCGAGGGCGAGCAGATCGAGGACATCCAGGTGGTCTCCACCGGCTCGCTGG
GCCTGGATATCGCCCTGGGCGTGGGTGGCCTGCCGCGCGGGCGCGTGATCGAGATCTACGGGCCGGAATCCTCGGGCAAG
ACCACGCTCACGCTGCAGGTCATTGCCGAGATGCAAAAGCTCGGCGGCACCTGCGCCTTCATCGACGCCGAGCATGCGCT
CGACACCCAATACGCGCAAAAGCTCGGCGTGAATCTCAACGACATCCTCATCAGCCAGCCCGACACCGGCGAGCAGGCGC
TGGAGATCGTCGACTCCCTGGTGCGCTCGGGCGCCGTGGACCTGATCGTCGTGGACTCGGTCGCGGCCCTGGTGCCGAAG
GCCGAGATCGAGGGCGAGATGGGCGACCAGCTGCCCGGCCTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGCAAGCTCAC
GGCCACGATCAAGAAGACCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCC
CCGAGACCACGACGGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGATATCCGCCGCACGGGCAGCATCAAG
AAGGGTGACGAGGCCATAGGCAACGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCAGCCCGCCGTTCAAGACGGCCGA
GTTCGACATCCTGTTCGGCGAGGGCATCTCGCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCGCGCATCCTGGAAA
AGAGCGGCGCCTGGTATGCCTACAACGGCGAGAAGATAGGCCAGGGCCGCGACAACGCGCGCGAGTTCCTGCGCGAGAAC
CCCGACCTGGCGCGCGAGATCGAGAACAAGGTGCGCGAGAGCCTGGGCATCGCCCTGCTGCCCGTGGCCACGGCGGGCGA
TGCGGCCGAGGACAAGCCCGGCCGCGGCAAGAAGGCCGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.402

90.608

0.738
  recA Glaesserella parasuis strain SC1401

67.614

97.238

0.657
  recA Pseudomonas stutzeri DSM 10701

73.065

89.227

0.652
  recA Neisseria gonorrhoeae MS11

71.646

90.608

0.649
  recA Neisseria gonorrhoeae MS11

71.646

90.608

0.649
  recA Neisseria gonorrhoeae strain FA1090

71.646

90.608

0.649
  recA Acinetobacter baylyi ADP1

68.622

94.199

0.646
  recA Acinetobacter baumannii D1279779

71.207

89.227

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.969

89.227

0.624
  recA Vibrio cholerae strain A1552

69.969

89.227

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.176

93.923

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.882

93.923

0.619
  recA Helicobacter pylori 26695

66.564

90.055

0.599
  recA Helicobacter pylori strain NCTC11637

66.258

90.055

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

65.443

90.331

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.651

91.713

0.575
  recA Streptococcus pyogenes NZ131

62.31

90.884

0.566
  recA Lactococcus lactis subsp. cremoris KW2

61.631

91.436

0.564
  recA Streptococcus mutans UA159

61.212

91.16

0.558
  recA Streptococcus pneumoniae D39

61.027

91.436

0.558
  recA Streptococcus pneumoniae Rx1

61.027

91.436

0.558
  recA Streptococcus pneumoniae R6

61.027

91.436

0.558
  recA Streptococcus pneumoniae TIGR4

61.027

91.436

0.558
  recA Streptococcus mitis NCTC 12261

60.725

91.436

0.555
  recA Streptococcus mitis SK321

60.725

91.436

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

89.503

0.536

Multiple sequence alignment