Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAFM42_RS16760 Genome accession   NZ_CP160329
Coordinates   3340593..3341651 (+) Length   352 a.a.
NCBI ID   WP_017137075.1    Uniprot ID   A0A0W0HGH4
Organism   Pseudomonas fluorescens strain PFX1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3327180..3339978 3340593..3341651 flank 615


Gene organization within MGE regions


Location: 3327180..3341651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFM42_RS16660 (AAFM42_16615) - 3327180..3327827 (+) 648 WP_025856862.1 XRE family transcriptional regulator -
  AAFM42_RS16665 (AAFM42_16620) - 3327855..3328157 (+) 303 WP_141125153.1 hypothetical protein -
  AAFM42_RS16670 (AAFM42_16625) - 3328216..3328548 (+) 333 Protein_3268 phage holin family protein -
  AAFM42_RS16675 (AAFM42_16630) - 3328558..3329070 (+) 513 WP_053254661.1 hypothetical protein -
  AAFM42_RS16680 (AAFM42_16635) - 3329121..3329732 (+) 612 WP_053254662.1 phage baseplate assembly protein V -
  AAFM42_RS16685 (AAFM42_16640) - 3329764..3330096 (+) 333 WP_053254663.1 hypothetical protein -
  AAFM42_RS16690 (AAFM42_16645) - 3330093..3331088 (+) 996 WP_053254664.1 baseplate J/gp47 family protein -
  AAFM42_RS16695 (AAFM42_16650) - 3331085..3331813 (+) 729 WP_053254665.1 phage tail protein I -
  AAFM42_RS16700 (AAFM42_16655) - 3331810..3332343 (+) 534 WP_053254666.1 hypothetical protein -
  AAFM42_RS16705 (AAFM42_16660) - 3333026..3333283 (+) 258 WP_073637230.1 tail fiber assembly protein -
  AAFM42_RS16710 (AAFM42_16665) - 3333353..3333526 (+) 174 WP_167422742.1 hypothetical protein -
  AAFM42_RS16715 (AAFM42_16670) - 3333566..3334732 (+) 1167 WP_053254668.1 phage tail protein -
  AAFM42_RS16720 (AAFM42_16675) - 3334732..3335238 (+) 507 WP_053254669.1 phage major tail tube protein -
  AAFM42_RS16725 (AAFM42_16680) - 3335297..3335869 (+) 573 WP_053254670.1 phage tail assembly protein -
  AAFM42_RS16730 (AAFM42_16685) - 3335915..3337774 (+) 1860 WP_053254671.1 hypothetical protein -
  AAFM42_RS16735 (AAFM42_16690) - 3337774..3338157 (+) 384 WP_053254672.1 phage tail protein -
  AAFM42_RS16740 (AAFM42_16695) - 3338150..3338362 (+) 213 WP_005785409.1 tail protein X -
  AAFM42_RS16745 (AAFM42_16700) - 3338388..3339398 (+) 1011 WP_053254673.1 contractile injection system protein, VgrG/Pvc8 family -
  AAFM42_RS16750 (AAFM42_16705) - 3339421..3339978 (+) 558 WP_053254674.1 glycoside hydrolase family 19 protein -
  AAFM42_RS16755 (AAFM42_16710) - 3340018..3340518 (+) 501 WP_053254675.1 CinA family protein -
  AAFM42_RS16760 (AAFM42_16715) recA 3340593..3341651 (+) 1059 WP_017137075.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37634.21 Da        Isoelectric Point: 5.3036

>NTDB_id=1020520 AAFM42_RS16760 WP_017137075.1 3340593..3341651(+) (recA) [Pseudomonas fluorescens strain PFX1]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVEEVEEVDTDI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1020520 AAFM42_RS16760 WP_017137075.1 3340593..3341651(+) (recA) [Pseudomonas fluorescens strain PFX1]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCTCTTGACCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTGCCGAAAGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGT
TGAAGTTCTACGCTTCGGTCCGTCTGGATATCCGCCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTGGTGGGTAGCGAA
ACCCGCGTTAAAGTTGTGAAGAACAAGGTGGCCCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTACTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGATATCGCTGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACCCCGGCACCAGACGTGAAAGCTGCTGCCAACCGCGAGCCGGTTGAAGAAGTAGAAGA
AGTCGACACTGACATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0HGH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.216

100

0.872
  recA Acinetobacter baylyi ADP1

75

97.727

0.733
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.076

93.466

0.702
  recA Vibrio cholerae strain A1552

75.076

93.466

0.702
  recA Ralstonia pseudosolanacearum GMI1000

68.347

100

0.693
  recA Glaesserella parasuis strain SC1401

69.429

99.432

0.69
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.943

100

0.599
  recA Helicobacter pylori 26695

59.375

100

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus mitis SK321

55.114

100

0.551
  recA Streptococcus pyogenes NZ131

58.232

93.182

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus mitis NCTC 12261

58.824

91.761

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.193

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.79

92.045

0.523

Multiple sequence alignment