Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABZS47_RS08930 Genome accession   NZ_CP160099
Coordinates   1894636..1895685 (+) Length   349 a.a.
NCBI ID   WP_003657786.1    Uniprot ID   -
Organism   Moraxella catarrhalis strain A_01_mct     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889636..1900685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZS47_RS08910 (ABZS47_08915) - 1889756..1890595 (-) 840 WP_003657793.1 TatD family hydrolase -
  ABZS47_RS08915 (ABZS47_08920) - 1890707..1891756 (-) 1050 WP_003657791.1 5'-nucleotidase -
  ABZS47_RS08920 (ABZS47_08925) - 1891838..1892380 (-) 543 WP_003657790.1 Tfp pilus assembly protein FimT/FimU -
  ABZS47_RS08925 (ABZS47_08930) - 1892364..1893782 (-) 1419 WP_003657789.1 FAD-binding oxidoreductase -
  ABZS47_RS08930 (ABZS47_08935) recA 1894636..1895685 (+) 1050 WP_003657786.1 recombinase RecA Machinery gene
  ABZS47_RS08935 (ABZS47_08940) - 1895731..1896627 (+) 897 WP_003657785.1 regulatory protein RecX -
  ABZS47_RS08940 (ABZS47_08945) - 1896657..1897601 (-) 945 WP_003657783.1 PHP domain-containing protein -
  ABZS47_RS08945 (ABZS47_08950) ftsZ 1897647..1898768 (-) 1122 WP_003657782.1 cell division protein FtsZ -
  ABZS47_RS08950 (ABZS47_08955) ftsA 1898970..1900268 (-) 1299 WP_003657781.1 cell division protein FtsA -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37597.02 Da        Isoelectric Point: 4.7476

>NTDB_id=1018016 ABZS47_RS08930 WP_003657786.1 1894636..1895685(+) (recA) [Moraxella catarrhalis strain A_01_mct]
MDENKEKALKAALAQIEKQFGKNTIMHLGDETAKLDVDVVSTGSLGLDIALGIGGLPKGRIIEIFGPESSGKTTLTLQTI
AECQKQGGTCAFIDAEHALDPIYAKKLGVNIDDLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGDEIIGS
ETRVKVIKNKMAPPFRQTEFQIMYGEGINRLGEVIDLGVDIGAVGKSGAWYSYGDGKIGQGKANTVKYLQENPAIASEIE
AKVREIKLATVTPIVESDESEEHLEDDNF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1018016 ABZS47_RS08930 WP_003657786.1 1894636..1895685(+) (recA) [Moraxella catarrhalis strain A_01_mct]
ATGGACGAAAATAAAGAAAAAGCACTCAAAGCCGCCTTGGCTCAAATTGAAAAACAGTTTGGTAAAAATACCATCATGCA
TTTGGGTGATGAAACAGCCAAGCTTGATGTGGATGTGGTCTCAACAGGTTCGCTTGGGCTTGATATTGCATTGGGTATCG
GTGGCTTGCCAAAAGGTCGAATTATTGAGATTTTTGGGCCTGAAAGCTCTGGTAAAACCACACTGACCTTACAAACCATT
GCCGAGTGCCAAAAGCAAGGCGGTACTTGTGCCTTTATTGATGCTGAACATGCACTTGATCCGATTTATGCCAAAAAGCT
TGGCGTCAATATTGATGATTTGCTTGTCTCGCAGCCTGACAATGGCGAACAGGCACTTGAGATTGCCGATATGCTCGTAC
GCTCAGGTGCCATTGATCTGATTGTCGTAGACTCAGTGGCTGCTTTGACTCCAAAAGCTGAAATTGAAGGTGAAATGGGC
GACAGCCACATGGGTCTGCAAGCACGCTTGATGAGCCAAGCACTGCGTAAAATTACTGGCAACGCCAAGCGTTCAAATTG
TATGGTGATTTTTATTAACCAAATCCGTATGAAAATTGGCGTCATGTTTGGCAGTCCAGAAACGACCACAGGTGGTAATG
CCCTAAAATTCTATGCCTCTGTGCGTCTTGATATTCGACGCATTGGCTCTGTCAAAGATGGCGATGAGATTATTGGTTCA
GAAACACGCGTCAAAGTCATCAAAAATAAGATGGCACCGCCATTTCGCCAAACCGAATTTCAAATTATGTACGGTGAGGG
CATTAACCGCCTAGGTGAGGTGATCGATTTGGGTGTTGATATTGGTGCTGTTGGTAAGTCAGGTGCTTGGTACAGTTATG
GTGATGGTAAAATTGGTCAAGGTAAAGCCAATACGGTCAAATATCTGCAAGAAAATCCTGCCATTGCCAGCGAAATCGAA
GCCAAAGTTCGTGAGATTAAATTAGCCACAGTCACACCCATCGTAGAATCAGATGAGTCTGAAGAGCATTTAGAAGATGA
TAATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

79.07

98.567

0.779
  recA Acinetobacter baumannii D1279779

79.3

98.281

0.779
  recA Pseudomonas stutzeri DSM 10701

74.487

97.708

0.728
  recA Vibrio cholerae strain A1552

75.305

93.983

0.708
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.305

93.983

0.708
  recA Glaesserella parasuis strain SC1401

70.435

98.854

0.696
  recA Ralstonia pseudosolanacearum GMI1000

71.299

94.842

0.676
  recA Neisseria gonorrhoeae MS11

69.939

93.41

0.653
  recA Neisseria gonorrhoeae MS11

69.939

93.41

0.653
  recA Neisseria gonorrhoeae strain FA1090

69.939

93.41

0.653
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.407

98.567

0.645
  recA Helicobacter pylori 26695

65.951

93.41

0.616
  recA Helicobacter pylori strain NCTC11637

65.644

93.41

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.526

94.269

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

63.354

92.264

0.585
  recA Streptococcus pneumoniae R6

61.728

92.837

0.573
  recA Streptococcus pneumoniae TIGR4

61.728

92.837

0.573
  recA Streptococcus pneumoniae Rx1

61.728

92.837

0.573
  recA Streptococcus pneumoniae D39

61.728

92.837

0.573
  recA Streptococcus mitis NCTC 12261

61.42

92.837

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.491

92.264

0.567
  recA Streptococcus mitis SK321

61.111

92.837

0.567
  recA Streptococcus mutans UA159

57.558

98.567

0.567
  recA Lactococcus lactis subsp. cremoris KW2

60.429

93.41

0.564
  recA Streptococcus pyogenes NZ131

59.816

93.41

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.248

92.264

0.556

Multiple sequence alignment