Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABZT96_RS02965 Genome accession   NZ_CP160089
Coordinates   626096..627178 (+) Length   360 a.a.
NCBI ID   WP_006587019.1    Uniprot ID   -
Organism   Lactobacillus mulieris strain 294_F1_4-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 621096..632178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZT96_RS02945 (ABZT96_02935) - 622257..623492 (+) 1236 WP_006587023.1 pitrilysin family protein -
  ABZT96_RS02950 (ABZT96_02940) ymfI 623503..624231 (+) 729 WP_006587022.1 elongation factor P 5-aminopentanone reductase -
  ABZT96_RS02955 (ABZT96_02945) - 624284..625348 (+) 1065 WP_022091230.1 RodZ family helix-turn-helix domain-containing protein -
  ABZT96_RS02960 (ABZT96_02950) pgsA 625356..625919 (+) 564 WP_006587020.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABZT96_RS02965 (ABZT96_02955) recA 626096..627178 (+) 1083 WP_006587019.1 recombinase RecA Machinery gene
  ABZT96_RS02970 (ABZT96_02960) rny 627302..628933 (+) 1632 WP_006587018.1 ribonuclease Y -
  ABZT96_RS02975 (ABZT96_02965) - 629039..630208 (+) 1170 WP_006587017.1 MraY family glycosyltransferase -
  ABZT96_RS02980 (ABZT96_02970) - 630246..630908 (-) 663 WP_006587016.1 YigZ family protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38953.37 Da        Isoelectric Point: 5.3971

>NTDB_id=1017899 ABZT96_RS02965 WP_006587019.1 626096..627178(+) (recA) [Lactobacillus mulieris strain 294_F1_4-1]
MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKVDTQISTVPTGSLALDAAIGVGGYPRGRIVEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMG
DSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVDKDIVDKAGSWYSYKEDRIGQGRENAKQYLEDHPDIYNEIM
TQVREAYGIDAKSLEEKEDPAKIKEKIEQDEKSGEKASKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=1017899 ABZT96_RS02965 WP_006587019.1 626096..627178(+) (recA) [Lactobacillus mulieris strain 294_F1_4-1]
TTGGCTAAAGATGAGAAACAAGCTGCTTTAGATGCAGCACTGAAGAAAATTGAAAAGAACTTTGGTAAGGGCGCTGTAAT
GCGCATGGGAGAAAAGGTTGATACTCAAATATCTACTGTCCCAACAGGATCTTTGGCTCTTGATGCCGCTATCGGTGTAG
GAGGATACCCTCGTGGCCGGATTGTGGAAGTATATGGGCCTGAATCATCTGGTAAGACAACTGTGGCCTTGCATGCAGTT
GCAGAAGTTCAAAAACGTGGAGGAACTGCTGCATATATTGATGCAGAAAATGCAATGGACCCAGCTTATGCAGAAGCTTT
AGGTGTTGATATTGATTCACTTATCTTATCTCAACCTAATACCGGTGAAGAAGGCTTACAAATTGCGGATACATTGATTG
CAAGTGGAGCGATAGATATCTTGGTAGTTGACTCTGTTGCTGCTTTAGTACCTAGAGCTGAAATTGATGGAGAAATGGGT
GACTCTCACGTTGGGTTACAAGCCCGATTGATGAGTCAAGCATTACGTAAATTGTCTGGTAATATTAATAAGACTAAGAC
TATTGCCATTTTCATTAACCAAATTCGTGAAAAAGTTGGCGTTATGTTTGGTAACCCGGAAACAACGCCTGGTGGTCGCG
CATTAAAGTTTTATTCAACTATTCGTCTTGAAGTGCGCCGTGCGGAACAAATTAAACAATCAAGTGATGTTGTGGGTAAC
CGTGTGAAAATTAAAGTTGTGAAGAACAAGGTTGCACCGCCTTTTAAAGTTGCTGAAGTTGATATTATGTATGGTAAAGG
AATATCCCAATCTGGCGAATTATTAGATATGGCAGTTGATAAGGATATTGTTGACAAAGCCGGATCATGGTACTCATATA
AGGAAGATAGAATTGGTCAAGGCCGAGAAAATGCCAAGCAATATTTGGAAGACCATCCAGACATCTATAATGAAATTATG
ACTCAAGTTCGTGAAGCATATGGAATTGATGCAAAATCACTTGAAGAAAAAGAAGATCCTGCAAAAATAAAGGAAAAAAT
TGAGCAGGATGAAAAAAGTGGCGAAAAAGCTAGTAAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.251

96.389

0.764
  recA Bacillus subtilis subsp. subtilis str. 168

74.54

90.556

0.675
  recA Streptococcus mutans UA159

66.479

98.611

0.656
  recA Streptococcus mitis NCTC 12261

67.638

95.278

0.644
  recA Streptococcus pneumoniae TIGR4

67.552

94.167

0.636
  recA Streptococcus pneumoniae Rx1

67.552

94.167

0.636
  recA Streptococcus pneumoniae D39

67.552

94.167

0.636
  recA Streptococcus pneumoniae R6

67.552

94.167

0.636
  recA Streptococcus pyogenes NZ131

68.997

91.389

0.631
  recA Streptococcus mitis SK321

68.389

91.389

0.625
  recA Lactococcus lactis subsp. cremoris KW2

66.261

91.389

0.606
  recA Acinetobacter baumannii D1279779

58.651

94.722

0.556
  recA Neisseria gonorrhoeae MS11

59.347

93.611

0.556
  recA Neisseria gonorrhoeae MS11

59.347

93.611

0.556
  recA Neisseria gonorrhoeae strain FA1090

59.347

93.611

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

91.111

0.553
  recA Acinetobacter baylyi ADP1

60.87

89.444

0.544
  recA Helicobacter pylori 26695

56.14

95

0.533
  recA Helicobacter pylori strain NCTC11637

56.14

95

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.055

91.389

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

89.722

0.528
  recA Pseudomonas stutzeri DSM 10701

59.19

89.167

0.528
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.075

89.444

0.519
  recA Vibrio cholerae strain A1552

58.075

89.444

0.519
  recA Ralstonia pseudosolanacearum GMI1000

59.425

86.944

0.517
  recA Glaesserella parasuis strain SC1401

54.381

91.944

0.5

Multiple sequence alignment