Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABZU04_RS03470 Genome accession   NZ_CP160084
Coordinates   766925..768007 (-) Length   360 a.a.
NCBI ID   WP_006585002.1    Uniprot ID   -
Organism   Lactobacillus jensenii strain 188_F1_4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761925..773007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU04_RS03455 (ABZU04_03455) - 763193..763855 (+) 663 WP_006585001.1 YigZ family protein -
  ABZU04_RS03460 (ABZU04_03460) - 763895..765064 (-) 1170 WP_006587949.1 MraY family glycosyltransferase -
  ABZU04_RS03465 (ABZU04_03465) rny 765170..766801 (-) 1632 WP_006587950.1 ribonuclease Y -
  ABZU04_RS03470 (ABZU04_03470) recA 766925..768007 (-) 1083 WP_006585002.1 recombinase RecA Machinery gene
  ABZU04_RS03475 (ABZU04_03475) pgsA 768187..768750 (-) 564 WP_006585003.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABZU04_RS03480 (ABZU04_03480) - 768758..769810 (-) 1053 WP_151141474.1 RodZ family helix-turn-helix domain-containing protein -
  ABZU04_RS03485 (ABZU04_03485) ymfI 769863..770591 (-) 729 WP_006585004.1 elongation factor P 5-aminopentanone reductase -
  ABZU04_RS03490 (ABZU04_03490) - 770602..771837 (-) 1236 WP_006587952.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38914.33 Da        Isoelectric Point: 5.3940

>NTDB_id=1017816 ABZU04_RS03470 WP_006585002.1 766925..768007(-) (recA) [Lactobacillus jensenii strain 188_F1_4]
MAKDEKQAALDAALKKIEKNFGKGAVMRMGEKVDTQISTIPTGSLALDAAIGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLIASGAIDILVVDSVAALVPRAEIDGEMG
DSHVGLQARLMSQALRKLSGNINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQIKQSSDVVGN
RVKIKVVKNKVAPPFKVAEVDIMYGKGISQSGELLDMAVEKDIVDKAGSWYSYNDEKIGQGRENAKQYLEDHPDIYSEIM
TKVREAYGIDAKSLEEKEDPAKVKEKIDQDEKSSDKASKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=1017816 ABZU04_RS03470 WP_006585002.1 766925..768007(-) (recA) [Lactobacillus jensenii strain 188_F1_4]
TTGGCTAAAGATGAGAAACAAGCTGCTTTAGATGCAGCGTTAAAAAAGATTGAGAAAAACTTCGGTAAAGGTGCAGTAAT
GCGCATGGGAGAAAAGGTTGATACACAGATTTCAACTATTCCAACAGGCTCTTTAGCTCTTGATGCAGCTATTGGAGTGG
GTGGATATCCTCGTGGCCGAATTATTGAAGTATATGGACCAGAATCATCTGGTAAGACGACGGTCGCTTTGCATGCAGTT
GCTGAAGTTCAAAAGCGTGGCGGAACTGCTGCATATATTGATGCGGAAAATGCTATGGATCCAGCTTATGCAGAAGCTTT
AGGCGTTGATATTGATTCACTTATCTTATCTCAACCTAATACCGGTGAAGAAGGTTTACAAATTGCTGACACATTGATTG
CCAGTGGAGCAATAGATATTTTGGTTGTTGACTCCGTTGCTGCCTTAGTGCCAAGAGCTGAAATTGATGGTGAAATGGGA
GATTCACATGTTGGTTTGCAAGCTCGGTTAATGAGTCAAGCTTTACGTAAATTATCTGGTAATATTAATAAGACTAAGAC
TATTGCACTCTTTATCAACCAGATTCGTGAAAAAGTAGGTGTTATGTTTGGTAACCCAGAGACAACACCTGGTGGACGAG
CACTTAAGTTTTATTCAACTATTAGACTTGAAGTTCGTCGTGCGGAACAGATTAAGCAATCAAGTGATGTTGTAGGTAAC
CGTGTAAAAATTAAAGTAGTTAAGAACAAGGTTGCCCCACCTTTTAAGGTTGCTGAAGTGGATATCATGTATGGTAAAGG
AATATCCCAATCTGGTGAATTACTGGATATGGCCGTTGAAAAAGACATTGTCGATAAGGCTGGATCATGGTATTCATATA
ATGATGAAAAAATTGGTCAAGGTCGGGAAAATGCTAAGCAGTATTTGGAAGATCATCCAGATATCTATTCTGAAATTATG
ACCAAAGTTCGTGAAGCATATGGAATTGATGCCAAGTCACTTGAAGAAAAAGAAGATCCAGCAAAAGTAAAAGAAAAAAT
TGATCAGGATGAGAAAAGTAGCGACAAAGCTAGTAAAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.31

96.667

0.767
  recA Bacillus subtilis subsp. subtilis str. 168

73.926

90.556

0.669
  recA Streptococcus mutans UA159

65.819

98.333

0.647
  recA Streptococcus mitis NCTC 12261

67.638

95.278

0.644
  recA Streptococcus pneumoniae R6

64.888

98.889

0.642
  recA Streptococcus pneumoniae Rx1

64.888

98.889

0.642
  recA Streptococcus pneumoniae D39

64.888

98.889

0.642
  recA Streptococcus pneumoniae TIGR4

64.888

98.889

0.642
  recA Streptococcus pyogenes NZ131

69.909

91.389

0.639
  recA Streptococcus mitis SK321

68.389

91.389

0.625
  recA Lactococcus lactis subsp. cremoris KW2

67.173

91.389

0.614
  recA Neisseria gonorrhoeae MS11

60.237

93.611

0.564
  recA Neisseria gonorrhoeae MS11

60.237

93.611

0.564
  recA Neisseria gonorrhoeae strain FA1090

60.237

93.611

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.976

91.111

0.556
  recA Acinetobacter baumannii D1279779

58.651

94.722

0.556
  recA Helicobacter pylori strain NCTC11637

57.31

95

0.544
  recA Helicobacter pylori 26695

57.31

95

0.544
  recA Acinetobacter baylyi ADP1

60.248

89.444

0.539
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.663

91.389

0.536
  recA Pseudomonas stutzeri DSM 10701

58.567

89.167

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.385

89.444

0.522
  recA Vibrio cholerae strain A1552

58.385

89.444

0.522
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.204

89.722

0.522
  recA Ralstonia pseudosolanacearum GMI1000

59.425

86.944

0.517
  recA Glaesserella parasuis strain SC1401

54.079

91.944

0.497

Multiple sequence alignment