Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABZU01_RS02870 Genome accession   NZ_CP160079
Coordinates   558662..559699 (+) Length   345 a.a.
NCBI ID   WP_006729562.1    Uniprot ID   A0A6G7BB00
Organism   Lactobacillus iners strain Liners_2503_V10-0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553662..564699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZU01_RS02850 (ABZU01_02845) - 554339..555553 (+) 1215 WP_006734421.1 insulinase family protein -
  ABZU01_RS02855 (ABZU01_02850) - 555550..556773 (+) 1224 WP_006734427.1 pitrilysin family protein -
  ABZU01_RS02860 (ABZU01_02855) - 556882..557958 (+) 1077 WP_006734414.1 RodZ family helix-turn-helix domain-containing protein -
  ABZU01_RS02865 (ABZU01_02860) pgsA 557961..558539 (+) 579 WP_006734412.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABZU01_RS02870 (ABZU01_02865) recA 558662..559699 (+) 1038 WP_006729562.1 recombinase RecA Machinery gene
  ABZU01_RS02875 (ABZU01_02870) rny 559783..561414 (+) 1632 WP_006734426.1 ribonuclease Y -
  ABZU01_RS02880 (ABZU01_02875) - 561509..562645 (+) 1137 WP_006729564.1 glycosyltransferase family 4 protein -
  ABZU01_RS02885 (ABZU01_02880) - 562693..563358 (-) 666 WP_102877974.1 YigZ family protein -
  ABZU01_RS02890 (ABZU01_02885) - 563399..564688 (+) 1290 WP_035517344.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37192.21 Da        Isoelectric Point: 4.9848

>NTDB_id=1017736 ABZU01_RS02870 WP_006729562.1 558662..559699(+) (recA) [Lactobacillus iners strain Liners_2503_V10-0]
MAKDEKKAALELALKKIEKNFGKGAVMRMGEKVDTKISTISTGSIALDTALGVGGYPRGRIIEVYGPESSGKTTVALHAV
AEVQKNGGTAAYIDAENAMDPAYAEALGVDIDSLILSQPNTGEEGLQIADTLISSGAIDILVVDSVAALVPRAEIEGEMG
DAHVGLQARLMSQALRKLSGNISKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRKSEQIKQGSDPIGS
RVKIKVVKNKVAPPFKVATVDIMYGIGISKSGELLDMAVDKDIVNKSGAWYSYGDDRIGQGRENAKQYLEEHPDIFREIN
DKVRQAYGIDNKESDEDSSEDTEQE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1017736 ABZU01_RS02870 WP_006729562.1 558662..559699(+) (recA) [Lactobacillus iners strain Liners_2503_V10-0]
TTGGCTAAAGATGAAAAAAAAGCTGCTCTTGAATTAGCCTTGAAAAAAATTGAAAAAAATTTTGGTAAAGGTGCAGTAAT
GCGAATGGGTGAAAAGGTCGATACTAAAATATCAACTATTTCTACTGGTTCGATTGCTCTTGATACTGCACTGGGAGTAG
GAGGCTATCCTCGAGGCAGAATTATTGAAGTTTATGGACCGGAAAGTTCCGGAAAAACTACAGTTGCTTTACATGCAGTA
GCTGAAGTTCAAAAAAATGGCGGAACTGCAGCATATATTGATGCAGAAAATGCTATGGATCCTGCCTATGCAGAAGCATT
AGGCGTTGATATTGATTCATTGATTTTATCACAGCCTAATACTGGTGAAGAAGGATTACAGATTGCTGATACTTTAATTT
CTAGTGGAGCGATCGACATTCTGGTGGTAGATTCTGTTGCTGCATTAGTTCCACGAGCAGAAATTGAAGGTGAGATGGGC
GATGCACACGTTGGATTACAAGCCCGCTTAATGAGTCAAGCCTTAAGAAAATTATCTGGCAATATTTCTAAGACTAAAAC
GATTGCTATTTTCATTAATCAAATACGTGAAAAAGTCGGTGTTATGTTTGGTAACCCTGAAACTACACCAGGTGGTCGTG
CTCTTAAGTTTTACTCTACTATTAGGTTGGAAGTAAGAAAATCAGAACAAATTAAACAAGGTAGCGATCCTATAGGAAGT
CGTGTAAAAATTAAAGTTGTCAAAAATAAGGTTGCACCTCCATTTAAGGTTGCTACAGTAGATATTATGTATGGTATTGG
TATTTCTAAGAGTGGAGAGCTTTTAGATATGGCGGTTGATAAAGATATCGTCAATAAATCTGGGGCATGGTATTCCTATG
GCGATGATCGTATCGGTCAAGGTCGAGAAAACGCTAAACAATATTTGGAGGAACATCCTGATATTTTCCGGGAAATAAAT
GATAAAGTACGACAGGCCTATGGTATTGACAATAAAGAATCTGATGAAGATTCGAGTGAAGATACCGAGCAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7BB00

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.36

99.71

0.791
  recA Bacillus subtilis subsp. subtilis str. 168

72.171

94.783

0.684
  recA Streptococcus pneumoniae D39

67.341

100

0.675
  recA Streptococcus pneumoniae R6

67.341

100

0.675
  recA Streptococcus pneumoniae TIGR4

67.341

100

0.675
  recA Streptococcus pneumoniae Rx1

67.341

100

0.675
  recA Streptococcus mitis SK321

66.667

100

0.667
  recA Streptococcus mutans UA159

66.86

99.71

0.667
  recA Streptococcus mitis NCTC 12261

67.155

98.841

0.664
  recA Streptococcus pyogenes NZ131

68.997

95.362

0.658
  recA Lactococcus lactis subsp. cremoris KW2

68.085

95.362

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.601

99.42

0.583
  recA Acinetobacter baylyi ADP1

58.601

99.42

0.583
  recA Neisseria gonorrhoeae MS11

61.28

95.072

0.583
  recA Neisseria gonorrhoeae MS11

61.28

95.072

0.583
  recA Neisseria gonorrhoeae strain FA1090

61.28

95.072

0.583
  recA Helicobacter pylori strain NCTC11637

59.697

95.652

0.571
  recA Helicobacter pylori 26695

59.697

95.652

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.756

95.072

0.568
  recA Acinetobacter baumannii D1279779

60.372

93.623

0.565
  recA Pseudomonas stutzeri DSM 10701

59.502

93.043

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

93.623

0.554
  recA Ralstonia pseudosolanacearum GMI1000

60.064

90.725

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.764

93.333

0.539
  recA Vibrio cholerae strain A1552

57.764

93.333

0.539
  recA Glaesserella parasuis strain SC1401

57.321

93.043

0.533

Multiple sequence alignment