Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABVF11_RS02770 Genome accession   NZ_CP159610
Coordinates   514356..515408 (+) Length   350 a.a.
NCBI ID   WP_057799190.1    Uniprot ID   A0A0R2NLL7
Organism   Pediococcus argentinicus strain z30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 509356..520408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF11_RS02745 (ABVF11_02745) - 509413..510720 (+) 1308 WP_353990154.1 pitrilysin family protein -
  ABVF11_RS02750 (ABVF11_02750) - 510717..511442 (+) 726 WP_353990155.1 SDR family oxidoreductase -
  ABVF11_RS02755 (ABVF11_02755) - 511494..512345 (+) 852 WP_353990156.1 RodZ domain-containing protein -
  ABVF11_RS02760 (ABVF11_02760) pgsA 512357..512920 (+) 564 WP_353990157.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABVF11_RS02765 (ABVF11_02765) - 513028..514269 (+) 1242 WP_353990158.1 competence/damage-inducible protein A -
  ABVF11_RS02770 (ABVF11_02770) recA 514356..515408 (+) 1053 WP_057799190.1 recombinase RecA Machinery gene
  ABVF11_RS02775 (ABVF11_02775) rny 515607..517166 (+) 1560 WP_353990159.1 ribonuclease Y -
  ABVF11_RS02780 (ABVF11_02780) mutS 517351..519981 (+) 2631 WP_353990160.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37720.69 Da        Isoelectric Point: 4.8440

>NTDB_id=1014769 ABVF11_RS02770 WP_057799190.1 514356..515408(+) (recA) [Pediococcus argentinicus strain z30]
MADERQAALDKALKKIEKNFGKGSIMRMGDAADTQISTISSGSLALDDALGVGGFPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEEGLEIADALVTSGAVDLIVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQIKDGTDVIGNR
TRIRVVKNKVAPPFRKAEVDIMYGKGISQTGELIDMAVEKDLVGKSGSWYSYGEDRIGQGRENAKQYMEDHPDTRAELMA
KVREAYGMVPDATTESPKESKDPSELDLDN

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1014769 ABVF11_RS02770 WP_057799190.1 514356..515408(+) (recA) [Pediococcus argentinicus strain z30]
GTGGCAGATGAACGTCAAGCAGCCTTAGACAAGGCCCTTAAAAAAATCGAAAAAAACTTTGGTAAAGGCTCAATCATGCG
AATGGGTGATGCAGCTGATACTCAAATCTCAACTATTTCTAGTGGTTCATTAGCATTAGATGACGCATTAGGTGTTGGTG
GATTTCCACGTGGTAGAATCGTTGAAATATACGGACCAGAAAGTTCTGGTAAAACGACTGTTGCCTTGCACGCCGTTGCT
GAAGTACAAAAGCGTGGCGGAACAGCAGCATATATTGATGCTGAAAATGCCTTAGATCCCGTTTACGCTGAACACTTAGG
TGTAAACATTGATGATTTACTTCTTTCTCAACCAGATACTGGTGAAGAAGGTCTAGAAATTGCCGATGCATTGGTTACCA
GCGGTGCGGTTGACTTAATCGTAGTCGACTCTGTTGCTGCTTTGGTACCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCTCACGTTGGTTTGCAAGCTCGTTTAATGTCTCAAGCACTTCGTAAGTTATCAGGTTCTATCAATAAAACTAAAACAAT
CGCATTATTCATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTCGGTAATCCTGAAACAACACCAGGTGGTCGTGCTT
TGAAGTTTTACGCTACGGTTCGTCTTGAAGTACGTCGTGCAGAACAAATTAAAGATGGAACAGATGTTATTGGTAACCGA
ACTCGAATCAGAGTTGTTAAAAACAAGGTTGCACCACCATTTAGAAAAGCTGAAGTTGATATCATGTACGGAAAGGGTAT
TTCCCAAACCGGTGAGTTAATTGATATGGCTGTTGAAAAAGATCTTGTTGGTAAGAGCGGTTCTTGGTATTCATACGGTG
AAGACCGAATTGGACAAGGTCGTGAAAATGCTAAGCAATATATGGAAGATCATCCGGATACTCGCGCCGAATTAATGGCT
AAGGTTCGTGAAGCATATGGTATGGTACCAGATGCCACAACTGAAAGTCCTAAAGAATCTAAAGATCCTAGTGAATTAGA
TTTAGATAACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2NLL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.894

94.571

0.803
  recA Bacillus subtilis subsp. subtilis str. 168

75.61

93.714

0.709
  recA Streptococcus pyogenes NZ131

66.201

100

0.677
  recA Streptococcus mutans UA159

65.994

99.143

0.654
  recA Streptococcus mitis SK321

68.788

94.286

0.649
  recA Streptococcus mitis NCTC 12261

68.485

94.286

0.646
  recA Lactococcus lactis subsp. cremoris KW2

67.568

95.143

0.643
  recA Streptococcus pneumoniae D39

68.182

94.286

0.643
  recA Streptococcus pneumoniae Rx1

68.182

94.286

0.643
  recA Streptococcus pneumoniae R6

68.182

94.286

0.643
  recA Streptococcus pneumoniae TIGR4

68.182

94.286

0.643
  recA Pseudomonas stutzeri DSM 10701

59.77

99.429

0.594
  recA Ralstonia pseudosolanacearum GMI1000

65.714

90

0.591
  recA Neisseria gonorrhoeae MS11

62.31

94

0.586
  recA Neisseria gonorrhoeae strain FA1090

62.31

94

0.586
  recA Neisseria gonorrhoeae MS11

62.31

94

0.586
  recA Vibrio cholerae strain A1552

62.654

92.571

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.654

92.571

0.58
  recA Acinetobacter baylyi ADP1

58.333

99.429

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.671

93.714

0.569
  recA Glaesserella parasuis strain SC1401

56.936

98.857

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.271

94

0.557
  recA Acinetobacter baumannii D1279779

59.877

92.571

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.692

92.857

0.554
  recA Helicobacter pylori 26695

57.669

93.143

0.537
  recA Helicobacter pylori strain NCTC11637

57.669

93.143

0.537

Multiple sequence alignment