Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABVF02_RS04685 Genome accession   NZ_CP159598
Coordinates   947164..948225 (+) Length   353 a.a.
NCBI ID   WP_353991177.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain z15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 942164..953225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF02_RS04665 (ABVF02_04665) - 943114..943842 (+) 729 WP_003569514.1 SDR family oxidoreductase -
  ABVF02_RS04670 (ABVF02_04670) - 943929..944858 (+) 930 WP_353991175.1 RodZ domain-containing protein -
  ABVF02_RS04675 (ABVF02_04675) pgsA 944855..945448 (+) 594 WP_003569518.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABVF02_RS04680 (ABVF02_04680) cinA 945866..947107 (+) 1242 WP_353991176.1 competence/damage-inducible protein A Machinery gene
  ABVF02_RS04685 (ABVF02_04685) recA 947164..948225 (+) 1062 WP_353991177.1 recombinase RecA Machinery gene
  ABVF02_RS04690 (ABVF02_04690) rny 948520..950091 (+) 1572 WP_353991313.1 ribonuclease Y -
  ABVF02_RS04695 (ABVF02_04695) - 950185..950835 (-) 651 WP_003593868.1 YigZ family protein -
  ABVF02_RS04700 (ABVF02_04700) - 950863..952125 (+) 1263 WP_353991314.1 helicase-related protein -
  ABVF02_RS04705 (ABVF02_04705) - 952338..952799 (+) 462 WP_003583965.1 ComF family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37787.98 Da        Isoelectric Point: 5.8234

>NTDB_id=1014743 ABVF02_RS04685 WP_353991177.1 947164..948225(+) (recA) [Lacticaseibacillus paracasei strain z15]
MAGDERQKALDVALKRIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASISEDQPEIHQQAEV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=1014743 ABVF02_RS04685 WP_353991177.1 947164..948225(+) (recA) [Lacticaseibacillus paracasei strain z15]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAGGATTGAAAAGAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACACGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGATCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.674

98.3

0.773
  recA Bacillus subtilis subsp. subtilis str. 168

74.154

92.068

0.683
  recA Streptococcus mutans UA159

67.232

100

0.674
  recA Streptococcus mitis SK321

67.919

98.017

0.666
  recA Streptococcus mitis NCTC 12261

67.919

98.017

0.666
  recA Streptococcus pyogenes NZ131

70.606

93.484

0.66
  recA Streptococcus pneumoniae Rx1

69.486

93.768

0.652
  recA Streptococcus pneumoniae D39

69.486

93.768

0.652
  recA Streptococcus pneumoniae R6

69.486

93.768

0.652
  recA Streptococcus pneumoniae TIGR4

69.486

93.768

0.652
  recA Lactococcus lactis subsp. cremoris KW2

68.882

93.768

0.646
  recA Ralstonia pseudosolanacearum GMI1000

65.495

88.669

0.581
  recA Neisseria gonorrhoeae MS11

62.385

92.635

0.578
  recA Neisseria gonorrhoeae MS11

62.385

92.635

0.578
  recA Neisseria gonorrhoeae strain FA1090

62.385

92.635

0.578
  recA Acinetobacter baylyi ADP1

58.43

97.45

0.569
  recA Pseudomonas stutzeri DSM 10701

58.235

96.317

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.3

91.501

0.561
  recA Acinetobacter baumannii D1279779

61.059

90.935

0.555
  recA Glaesserella parasuis strain SC1401

54.83

99.717

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.716

92.635

0.544
  recA Helicobacter pylori 26695

58.182

93.484

0.544
  recA Helicobacter pylori strain NCTC11637

58.182

93.484

0.544
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.19

90.935

0.538
  recA Vibrio cholerae strain A1552

59.19

90.935

0.538
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.269

92.635

0.521

Multiple sequence alignment