Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABWH88_RS04885 Genome accession   NZ_CP159479
Coordinates   1049746..1050792 (-) Length   348 a.a.
NCBI ID   WP_014576523.1    Uniprot ID   E4PG70
Organism   Marinobacter adhaerens strain ac5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1044746..1055792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH88_RS04860 (ABWH88_04860) fixJ 1045093..1045719 (-) 627 WP_008170525.1 response regulator FixJ -
  ABWH88_RS04865 (ABWH88_04865) - 1045759..1048167 (-) 2409 WP_092031537.1 ATP-binding protein -
  ABWH88_RS04870 (ABWH88_04870) - 1048385..1048762 (+) 378 WP_008170530.1 PilZ domain-containing protein -
  ABWH88_RS04875 (ABWH88_04875) - 1048778..1049248 (-) 471 WP_014576525.1 flavodoxin family protein -
  ABWH88_RS04880 (ABWH88_04880) - 1049300..1049749 (+) 450 WP_041645096.1 hypothetical protein -
  ABWH88_RS04885 (ABWH88_04885) recA 1049746..1050792 (-) 1047 WP_014576523.1 recombinase RecA Machinery gene
  ABWH88_RS04890 (ABWH88_04890) pncC 1050957..1051457 (-) 501 WP_014576522.1 nicotinamide-nucleotide amidase -
  ABWH88_RS04895 (ABWH88_04895) mutS 1051539..1054169 (+) 2631 WP_014576521.1 DNA mismatch repair protein MutS -
  ABWH88_RS04900 (ABWH88_04900) fdxA 1054320..1054643 (+) 324 WP_008170541.1 ferredoxin FdxA -
  ABWH88_RS04905 (ABWH88_04905) - 1054715..1055353 (-) 639 WP_014576519.1 LysE family translocator -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37572.18 Da        Isoelectric Point: 5.3415

>NTDB_id=1013744 ABWH88_RS04885 WP_014576523.1 1049746..1050792(-) (recA) [Marinobacter adhaerens strain ac5]
MEDNRKKALSAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRICEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFVDAEHALDPVYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGAVKDGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENMDIANEIEA
KVRDKLMPKPEPRKDAKEEPAEANGELL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1013744 ABWH88_RS04885 WP_014576523.1 1049746..1050792(-) (recA) [Marinobacter adhaerens strain ac5]
ATGGAAGACAACCGCAAGAAAGCATTGAGCGCAGCACTTGGGCAGATTGAGCGCCAGTTCGGCAAGGGCGCCGTGATGAA
AATGGGCGATCAGCCCCGCGAAGCCATTCCTGCGGTCTCCACCGGTTCCCTTGGCCTGGACGTTGCCCTGGGTATTGGCG
GTCTTCCATATGGTCGAATTTGCGAAATCTACGGTCCGGAAAGTTCCGGTAAGACGACGCTCACCCTCCAGGTAATTGCC
GAAGCACAAAAAGCCGGCAAAACCTGTGCATTCGTGGATGCCGAGCACGCGCTCGATCCGGTTTACGCCGAAAAGCTGGG
CGTCAATGTGGACGACCTTCTGGTGTCCCAGCCGGATACCGGTGAGCAGGCCCTGGAAATTGCCGACATGCTGGTTCGTT
CCAATGCGGTAGACGTGATCATCGTAGACTCCGTGGCGGCCCTGACCCCGAAAGCGGAAATCGAGGGTGAAATGGGCGAC
AGCCACGTAGGTCTGCAGGCGCGACTGATGTCCCAGGCGCTTCGCAAGCTGACCGGTAATGTCAAACACGCTAACTGCCT
GATGATTTTCATCAACCAGATCCGTATGAAAATCGGGGTTATGTTTGGCTCGCCCGAAACCACCACCGGTGGTAACGCGC
TGAAATTCTACTCCTCCGTTCGCCTTGATATCCGCCGCATTGGTGCCGTGAAAGATGGTGACGAGGTGGTCGGTAACGAG
ACCCGCGTGAAAGTGGTCAAGAACAAAGTATCGCCGCCGTTCAAGCAGGCCGAGTTCCAGATTATGTACGGTAAGGGCAT
TTACCACATGGCGGAAGTGCTGGATATGGGCGTCAAGGAAGGCTTTGTCGACAAGTCCGGAGCCTGGTACGCCTACAATG
GCGACAAGATCGGTCAGGGCAAGGCCAACGCCTGCAAGTTCCTGGAAGAAAACATGGACATTGCCAACGAGATCGAAGCC
AAGGTTCGGGACAAGTTGATGCCCAAGCCTGAACCCAGGAAAGACGCAAAAGAAGAGCCCGCAGAAGCCAACGGCGAGCT
GCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E4PG70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

81.957

93.966

0.77
  recA Acinetobacter baylyi ADP1

71.053

98.276

0.698
  recA Vibrio cholerae strain A1552

72.81

95.115

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.81

95.115

0.693
  recA Ralstonia pseudosolanacearum GMI1000

70.501

97.414

0.687
  recA Acinetobacter baumannii D1279779

72.783

93.966

0.684
  recA Glaesserella parasuis strain SC1401

71.951

94.253

0.678
  recA Neisseria gonorrhoeae MS11

70.988

93.103

0.661
  recA Neisseria gonorrhoeae MS11

70.988

93.103

0.661
  recA Neisseria gonorrhoeae strain FA1090

70.988

93.103

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Helicobacter pylori strain NCTC11637

60.947

97.126

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.69

0.592
  recA Helicobacter pylori 26695

60.355

97.126

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.241

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

92.529

0.56
  recA Streptococcus mutans UA159

59.077

93.391

0.552
  recA Streptococcus mitis SK321

55.202

99.425

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

93.103

0.543
  recA Streptococcus pneumoniae Rx1

57.975

93.678

0.543
  recA Streptococcus pneumoniae TIGR4

57.975

93.678

0.543
  recA Streptococcus pneumoniae D39

57.975

93.678

0.543
  recA Streptococcus pneumoniae R6

57.975

93.678

0.543
  recA Streptococcus pyogenes NZ131

57.317

94.253

0.54
  recA Streptococcus mitis NCTC 12261

57.895

92.816

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.816

0.537

Multiple sequence alignment