Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABWH87_RS07325 Genome accession   NZ_CP159474
Coordinates   1474675..1475787 (+) Length   370 a.a.
NCBI ID   WP_306051318.1    Uniprot ID   -
Organism   Oceaniradius stylonematis strain ac10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1469675..1480787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABWH87_RS07305 (ABWH87_07315) - 1470340..1471758 (+) 1419 WP_375567429.1 peptidoglycan DD-metalloendopeptidase family protein -
  ABWH87_RS07310 (ABWH87_07320) - 1471774..1472463 (-) 690 WP_158585133.1 Crp/Fnr family transcriptional regulator -
  ABWH87_RS07315 (ABWH87_07325) - 1472563..1473483 (-) 921 WP_375567430.1 pseudouridine-5'-phosphate glycosidase -
  ABWH87_RS07320 (ABWH87_07330) - 1473480..1474457 (-) 978 WP_375567431.1 PfkB family carbohydrate kinase -
  ABWH87_RS07325 (ABWH87_07335) recA 1474675..1475787 (+) 1113 WP_306051318.1 recombinase RecA Machinery gene
  ABWH87_RS07330 (ABWH87_07340) alaS 1476128..1478812 (+) 2685 WP_375567432.1 alanine--tRNA ligase -
  ABWH87_RS07335 (ABWH87_07345) - 1478885..1480096 (-) 1212 WP_306051322.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39503.98 Da        Isoelectric Point: 4.7001

>NTDB_id=1013712 ABWH87_RS07325 WP_306051318.1 1474675..1475787(+) (recA) [Oceaniradius stylonematis strain ac10]
MAQNNLRLVEGKSVDKSKALDAALAQIERSFGKGSIMRLGVNEQVVEIETVSTGSLGLDIALGVGGLPKGRIIEIYGPES
SGKTTMALHTVAEAQKEGGICAFIDAEHALDPVYARKLGVNLEDLLISQPDTGEQALEIADTLVRSGACDVLVIDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTASISRSNTMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKDRDEVVGNQTRVKVVKNKLAPPFKEVLFDIMYGEGVSKTGELIDLGVKAGIVEKSGSWFSYDSQRLGQGRENAKQFL
RDNVDVAARIEMALRQNAGLIAEQLLHDDETASAADAGDVDFDGDAAAEG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1013712 ABWH87_RS07325 WP_306051318.1 1474675..1475787(+) (recA) [Oceaniradius stylonematis strain ac10]
ATGGCTCAGAACAATTTGCGGTTGGTTGAGGGCAAATCGGTGGACAAGTCAAAGGCTCTGGACGCGGCGCTCGCGCAGAT
CGAACGATCCTTCGGCAAGGGCTCGATCATGCGGCTGGGCGTCAACGAGCAGGTCGTCGAGATCGAGACCGTCTCGACCG
GTTCGCTCGGCCTCGACATCGCGCTCGGCGTGGGCGGGCTGCCCAAGGGCCGCATCATCGAGATTTACGGGCCTGAAAGC
TCGGGCAAGACCACCATGGCGCTGCACACGGTGGCCGAGGCGCAGAAGGAGGGCGGCATCTGCGCCTTCATCGATGCCGA
ACACGCGCTCGATCCGGTCTATGCGCGCAAGCTGGGCGTCAATCTCGAAGACCTTCTGATCTCGCAGCCCGACACGGGCG
AGCAGGCGCTGGAAATCGCCGACACTCTGGTGCGGTCGGGGGCGTGCGATGTCTTGGTGATCGATTCGGTGGCCGCGCTG
ACGCCGCGCGCCGAAATCGAGGGCGAGATGGGCGATTCGCTGCCGGGCCTTCAGGCGCGGCTGATGAGCCAGGCGCTGCG
CAAGCTGACCGCCTCGATCTCGCGCTCGAACACGATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGCTCGCCCGAGACGACGACCGGCGGCAACGCGCTGAAATTCTATGCCTCGGTTCGGCTCGACATTCGCCGCATCGGC
GCGGTCAAGGATCGCGACGAGGTCGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTGGCGCCGCCTTTCAA
GGAGGTGCTGTTCGACATCATGTATGGCGAGGGCGTCTCCAAGACCGGCGAGCTGATCGATCTGGGCGTCAAGGCGGGCA
TCGTCGAAAAGTCCGGCTCCTGGTTCTCCTATGACAGCCAGCGGCTGGGGCAGGGGCGCGAGAACGCCAAGCAGTTCCTG
CGCGACAATGTCGATGTCGCCGCGCGGATCGAGATGGCCCTGCGCCAGAATGCCGGCCTGATCGCCGAGCAGCTTCTGCA
CGACGATGAAACCGCGTCCGCGGCCGATGCCGGCGACGTCGATTTCGACGGTGATGCAGCCGCCGAGGGCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

67.529

94.054

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.529

94.054

0.635
  recA Glaesserella parasuis strain SC1401

65.084

96.757

0.63
  recA Acinetobacter baylyi ADP1

68.035

92.162

0.627
  recA Ralstonia pseudosolanacearum GMI1000

72.93

84.865

0.619
  recA Acinetobacter baumannii D1279779

70.497

87.027

0.614
  recA Neisseria gonorrhoeae MS11

68.421

87.297

0.597
  recA Neisseria gonorrhoeae MS11

68.421

87.297

0.597
  recA Neisseria gonorrhoeae strain FA1090

68.421

87.297

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

67.178

88.108

0.592
  recA Pseudomonas stutzeri DSM 10701

67.913

86.757

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.939

88.649

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

88.378

0.573
  recA Helicobacter pylori strain NCTC11637

64.724

88.108

0.57
  recA Streptococcus mitis SK321

63.554

89.73

0.57
  recA Streptococcus pneumoniae D39

60.519

93.784

0.568
  recA Streptococcus pneumoniae TIGR4

60.519

93.784

0.568
  recA Streptococcus pneumoniae Rx1

60.519

93.784

0.568
  recA Streptococcus pneumoniae R6

60.519

93.784

0.568
  recA Helicobacter pylori 26695

64.417

88.108

0.568
  recA Streptococcus mitis NCTC 12261

62.952

89.73

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

63.914

88.378

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.194

90.541

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

88.108

0.551
  recA Streptococcus mutans UA159

61.078

90.27

0.551
  recA Streptococcus pyogenes NZ131

61.212

89.189

0.546

Multiple sequence alignment