Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABVN21_RS17705 Genome accession   NZ_CP159258
Coordinates   3913843..3914895 (-) Length   350 a.a.
NCBI ID   WP_339554439.1    Uniprot ID   A0AAU8DX16
Organism   Pseudomonas sp. MYb327     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3908843..3919895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVN21_RS17670 (ABVN21_17670) - 3909002..3909364 (-) 363 WP_008060649.1 diacylglycerol kinase -
  ABVN21_RS17675 (ABVN21_17675) erdR 3909440..3910090 (-) 651 WP_034149864.1 response regulator transcription factor ErdR -
  ABVN21_RS17680 (ABVN21_17680) - 3910298..3911041 (-) 744 WP_339554443.1 tRNA-uridine aminocarboxypropyltransferase -
  ABVN21_RS17685 (ABVN21_17685) - 3911231..3911653 (+) 423 WP_034149866.1 PA3611 family quorum-sensing-regulated virulence factor -
  ABVN21_RS17690 (ABVN21_17690) - 3911654..3911860 (-) 207 WP_339554442.1 hypothetical protein -
  ABVN21_RS17695 (ABVN21_17695) - 3912204..3913322 (+) 1119 WP_339554441.1 TIGR00730 family Rossman fold protein -
  ABVN21_RS17700 (ABVN21_17700) recX 3913367..3913834 (-) 468 WP_339554440.1 recombination regulator RecX -
  ABVN21_RS17705 (ABVN21_17705) recA 3913843..3914895 (-) 1053 WP_339554439.1 recombinase RecA Machinery gene
  ABVN21_RS17710 (ABVN21_17710) - 3914979..3915479 (-) 501 WP_339554438.1 CinA family protein -
  ABVN21_RS17715 (ABVN21_17715) mutS 3915827..3918406 (+) 2580 WP_339554437.1 DNA mismatch repair protein MutS -
  ABVN21_RS17720 (ABVN21_17720) fdxA 3918549..3918872 (+) 324 WP_339554436.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37343.87 Da        Isoelectric Point: 5.3111

>NTDB_id=1012933 ABVN21_RS17705 WP_339554439.1 3913843..3914895(-) (recA) [Pseudomonas sp. MYb327]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETEDDLADADI

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=1012933 ABVN21_RS17705 WP_339554439.1 3913843..3914895(-) (recA) [Pseudomonas sp. MYb327]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCAATCCCATCCATCTCTACTGGCTCTCTGGGTCTGGACATCGCGCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCTGAATCTTCCGGTAAAACCACGCTGACATTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGATCCTGAGTACGCCGGCAAACTGGG
CGTCAATGTCGACGACCTGCTGGTTTCCCAGCCGGATACCGGTGAGCAAGCACTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCGCTGGTGCCAAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTACGTAAAATCACCGGTAACATCAAAAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGATGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCAGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAATGGTGAGATGATCGACTTGGGTGTTCTGCACGGCTTCGTTGAAAAATCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCAAACTCGGCCAAGTTTTTGGCAGACAATCCGGAAATCGCGGCAAAGCTCGAGAAG
CAACTGCGCGACAAGCTGCTGACTCCAGCGCCGGACGTCAAGGCTTCCCCAGTCAAAGAGACTGAAGACGATCTGGCTGA
CGCTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

88.571

100

0.886
  recA Acinetobacter baylyi ADP1

73.547

98.286

0.723
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.076

94

0.706
  recA Vibrio cholerae strain A1552

75.076

94

0.706
  recA Acinetobacter baumannii D1279779

71.594

98.571

0.706
  recA Glaesserella parasuis strain SC1401

70.468

97.714

0.689
  recA Ralstonia pseudosolanacearum GMI1000

67.797

100

0.686
  recA Neisseria gonorrhoeae MS11

71.296

92.571

0.66
  recA Neisseria gonorrhoeae MS11

71.296

92.571

0.66
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.571

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

93.429

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

95.429

0.589
  recA Helicobacter pylori 26695

58.621

99.429

0.583
  recA Helicobacter pylori strain NCTC11637

58.621

99.429

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

61.059

91.714

0.56
  recA Streptococcus mutans UA159

59.692

92.857

0.554
  recA Streptococcus pneumoniae Rx1

58.589

93.143

0.546
  recA Streptococcus pneumoniae D39

58.589

93.143

0.546
  recA Streptococcus pneumoniae R6

58.589

93.143

0.546
  recA Streptococcus pneumoniae TIGR4

58.589

93.143

0.546
  recA Streptococcus mitis SK321

58.824

92.286

0.543
  recA Streptococcus mitis NCTC 12261

58.824

92.286

0.543
  recA Streptococcus pyogenes NZ131

57.622

93.714

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.255

91.714

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.481

92.571

0.523
  recA Lactococcus lactis subsp. cremoris KW2

56.347

92.286

0.52

Multiple sequence alignment