Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABMK85_RS01985 Genome accession   NZ_CP158718
Coordinates   378227..379297 (-) Length   356 a.a.
NCBI ID   WP_104491228.1    Uniprot ID   -
Organism   Paracoccus denitrificans strain XW11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 373227..384297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABMK85_RS01965 (ABMK85_01965) - 373569..373790 (+) 222 WP_011746947.1 hypothetical protein -
  ABMK85_RS01970 (ABMK85_01970) - 374195..374989 (-) 795 WP_287884890.1 class II glutamine amidotransferase -
  ABMK85_RS01975 (ABMK85_01975) - 375056..375346 (-) 291 WP_011746944.1 DUF1330 domain-containing protein -
  ABMK85_RS01980 (ABMK85_01980) alaS 375343..378000 (-) 2658 WP_287884889.1 alanine--tRNA ligase -
  ABMK85_RS01985 (ABMK85_01985) recA 378227..379297 (-) 1071 WP_104491228.1 recombinase RecA Machinery gene
  ABMK85_RS01990 (ABMK85_01990) - 379541..380125 (+) 585 WP_104491227.1 hypothetical protein -
  ABMK85_RS01995 (ABMK85_01995) - 380149..382191 (-) 2043 WP_287884888.1 ATP-binding protein -
  ABMK85_RS02000 (ABMK85_02000) - 382249..383400 (-) 1152 WP_287884887.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ABMK85_RS02005 (ABMK85_02005) - 383476..384279 (-) 804 WP_104491224.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38207.52 Da        Isoelectric Point: 4.9647

>NTDB_id=1012082 ABMK85_RS01985 WP_104491228.1 378227..379297(-) (recA) [Paracoccus denitrificans strain XW11]
MAGATLFDMNDKRSADKQKALDSALAQIERQFGKGSIMKLGADNPVAEIEATSTGSLGLDIALGIGGLPKGRIIEIFGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAVSLVVVDSVAA
LTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRT
GSIKDRDEVTGNATRVKVVKNKVAPPFRQVEFDIMYGEGISKVGELIDLGIKAGVVEKSGSWYSYGDERIGQGRENAKQF
LRDHPDMAHAIEDKIRASHGLDFGVADDGDEVMAED

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1012082 ABMK85_RS01985 WP_104491228.1 378227..379297(-) (recA) [Paracoccus denitrificans strain XW11]
ATGGCAGGGGCAACACTTTTCGACATGAACGACAAGCGATCCGCAGACAAGCAGAAGGCGCTGGACAGCGCGCTGGCCCA
GATCGAACGGCAGTTCGGCAAGGGCTCGATCATGAAGCTGGGCGCCGACAATCCGGTGGCCGAGATCGAGGCCACCTCGA
CCGGCTCGCTGGGGCTCGACATCGCGCTGGGGATCGGCGGTCTGCCCAAGGGCCGGATCATCGAGATATTCGGGCCGGAA
AGCTCGGGCAAGACCACGCTGACGCTGCATGTCGTGGCGGAAGAGCAGAAGAAAGGCGGCGTTTGCGCCTTTGTCGATGC
CGAGCATGCGCTGGACCCGCAATATGCCAAGAAGCTGGGCGTCAATCTGGACGAGTTGCTGATCAGCCAGCCCGATACGG
GCGAGCAGGCGCTTGAGATTGTCGATACGCTGGTGCGTTCCGGCGCGGTCAGCCTGGTGGTGGTCGATTCGGTCGCGGCG
CTGACCCCCAAGTCCGAGATCGAAGGTGACATGGGCGACATGCAGATGGGCAGCCAGGCCCGGCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGCCGGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGAAGCCCCGAGACGACGACCGGCGGCAATGCCCTGAAGTTTTATGCCTCGGTGCGCCTGGATATCCGCCGCACC
GGCTCGATCAAGGACCGTGACGAGGTGACCGGCAACGCCACTCGCGTCAAGGTGGTCAAGAACAAGGTTGCGCCGCCTTT
CCGTCAGGTCGAGTTCGACATCATGTATGGCGAGGGTATCTCGAAGGTCGGCGAACTGATCGACTTGGGCATCAAGGCCG
GCGTGGTCGAAAAATCGGGGTCGTGGTACTCCTATGGCGACGAGCGCATCGGCCAGGGCCGTGAGAATGCCAAGCAATTC
CTGCGCGATCATCCCGATATGGCCCATGCGATCGAGGACAAGATCCGCGCCAGCCACGGCTTGGATTTCGGCGTCGCGGA
CGATGGCGATGAGGTGATGGCCGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

72.866

92.135

0.671
  recA Neisseria gonorrhoeae MS11

68.563

93.82

0.643
  recA Neisseria gonorrhoeae MS11

68.563

93.82

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.563

93.82

0.643
  recA Pseudomonas stutzeri DSM 10701

69.876

90.449

0.632
  recA Vibrio cholerae strain A1552

70.093

90.169

0.632
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.093

90.169

0.632
  recA Glaesserella parasuis strain SC1401

70.312

89.888

0.632
  recA Acinetobacter baylyi ADP1

68.536

90.169

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.516

95.787

0.618
  recA Bacillus subtilis subsp. subtilis str. 168

67.073

92.135

0.618
  recA Acinetobacter baumannii D1279779

68.224

90.169

0.615
  recA Helicobacter pylori strain NCTC11637

63.93

95.787

0.612
  recA Helicobacter pylori 26695

63.93

95.787

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.644

91.573

0.601
  recA Streptococcus pneumoniae R6

59.155

99.719

0.59
  recA Streptococcus pneumoniae Rx1

59.155

99.719

0.59
  recA Streptococcus pneumoniae D39

59.155

99.719

0.59
  recA Streptococcus pneumoniae TIGR4

59.155

99.719

0.59
  recA Streptococcus mitis NCTC 12261

58.974

98.596

0.581
  recA Streptococcus mitis SK321

60

95.506

0.573
  recA Lactococcus lactis subsp. cremoris KW2

59.172

94.944

0.562
  recA Streptococcus pyogenes NZ131

60.486

92.416

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

60.736

91.573

0.556
  recA Streptococcus mutans UA159

59.697

92.697

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

91.011

0.539

Multiple sequence alignment