Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABSH62_RS04320 Genome accession   NZ_CP158579
Coordinates   906850..907914 (+) Length   354 a.a.
NCBI ID   WP_032995164.1    Uniprot ID   -
Organism   Cronobacter malonaticus strain B20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901850..912914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABSH62_RS04290 (ABSH62_04290) - 902227..902439 (-) 213 WP_007795818.1 KTSC domain-containing protein -
  ABSH62_RS04295 (ABSH62_04295) - 902612..903379 (+) 768 WP_032995161.1 basic amino acid ABC transporter substrate-binding protein -
  ABSH62_RS04300 (ABSH62_04300) - 903453..904217 (+) 765 WP_032968382.1 amino acid ABC transporter permease -
  ABSH62_RS04305 (ABSH62_04305) - 904204..904926 (+) 723 WP_007777670.1 amino acid ABC transporter ATP-binding protein -
  ABSH62_RS04310 (ABSH62_04310) mltB 905041..906123 (+) 1083 WP_032995162.1 lytic murein transglycosylase B -
  ABSH62_RS04315 (ABSH62_04315) pncC 906264..906761 (+) 498 WP_032981440.1 nicotinamide-nucleotide amidase -
  ABSH62_RS04320 (ABSH62_04320) recA 906850..907914 (+) 1065 WP_032995164.1 recombinase RecA Machinery gene
  ABSH62_RS04325 (ABSH62_04325) recX 907984..908481 (+) 498 WP_032995253.1 recombination regulator RecX -
  ABSH62_RS04330 (ABSH62_04330) alaS 908617..911244 (+) 2628 WP_032995166.1 alanine--tRNA ligase -
  ABSH62_RS04335 (ABSH62_04335) csrA 911488..911673 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38167.51 Da        Isoelectric Point: 4.7562

>NTDB_id=1011822 ABSH62_RS04320 WP_032995164.1 906850..907914(+) (recA) [Cronobacter malonaticus strain B20]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRAGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINFYGELVDLGVKHKLIEKAGAWYSYNGEKIGQGKANATNFLKENKSMADEI
EKKLREMLLNNQDSTPDFTVDDNDGGVEETNEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=1011822 ABSH62_RS04320 WP_032995164.1 906850..907914(+) (recA) [Cronobacter malonaticus strain B20]
ATGGCTATCGACGAAAACAAGCAGAAGGCGTTGGCGGCAGCACTCGGCCAGATTGAAAAGCAATTCGGCAAAGGCTCCAT
CATGCGTTTGGGTGAAGATCGCACCATGGATGTGGAAACGATCTCCACCGGCTCTCTCTCCCTGGATATCGCGCTGGGAG
CGGGCGGTCTGCCGATGGGGCGTATCGTGGAAATTTACGGCCCGGAATCTTCAGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCAGCACAGCGCGCGGGTAAAACCTGTGCGTTTATCGACGCAGAGCACGCGCTCGATCCCGTCTATGCCCGTAA
GCTCGGCGTAGATATCGATAACCTGCTCTGCTCTCAGCCGGACACCGGCGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGTTCCGGCGCGGTTGACGTGCTGGTTGTCGACTCCGTTGCGGCCCTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAAAACTCTAA
TACCCTGCTTATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCGGAAACCACGACCGGCGGTA
ACGCGCTGAAATTCTACGCGTCTGTGCGTCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGAGGAAGTGGTAGGT
AGCGAAACCCGCGTGAAAGTGGTGAAAAATAAAGTCGCTGCGCCGTTTAAACAGGCTGAGTTCCAGATCCTCTACGGGGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTTGGCGTGAAGCACAAGCTGATTGAAAAAGCGGGTGCCTGGTACAGCT
ACAACGGCGAGAAGATCGGTCAGGGTAAAGCGAACGCGACCAACTTCCTCAAAGAGAACAAGTCGATGGCTGACGAGATT
GAGAAGAAGCTGCGCGAAATGCTGCTCAACAATCAGGACTCTACGCCTGACTTCACCGTCGATGATAACGACGGCGGCGT
TGAAGAAACCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

93.503

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.503

0.788
  recA Pseudomonas stutzeri DSM 10701

74.184

95.198

0.706
  recA Acinetobacter baylyi ADP1

71.594

97.458

0.698
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baumannii D1279779

74.618

92.373

0.689
  recA Neisseria gonorrhoeae MS11

69.632

92.09

0.641
  recA Neisseria gonorrhoeae MS11

69.632

92.09

0.641
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.09

0.641
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.853

0.627
  recA Helicobacter pylori strain NCTC11637

62.315

95.198

0.593
  recA Helicobacter pylori 26695

62.018

95.198

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.963

91.525

0.576
  recA Streptococcus mutans UA159

62.769

91.808

0.576
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

62.154

91.808

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

93.785

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.678

0.556

Multiple sequence alignment