Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | ABR329_RS05605 | Genome accession | NZ_CP158364 |
| Coordinates | 1286128..1287321 (-) | Length | 397 a.a. |
| NCBI ID | WP_041473613.1 | Uniprot ID | - |
| Organism | Bifidobacterium longum strain PMC72 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1281966..1369523 | 1286128..1287321 | within | 0 |
Gene organization within MGE regions
Location: 1281966..1369523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABR329_RS05590 (ABR329_05590) | raiA | 1283993..1284655 (-) | 663 | WP_007054480.1 | ribosome-associated translation inhibitor RaiA | - |
| ABR329_RS05600 (ABR329_05600) | - | 1285532..1286125 (-) | 594 | WP_032735795.1 | regulatory protein RecX | - |
| ABR329_RS05605 (ABR329_05605) | recA | 1286128..1287321 (-) | 1194 | WP_041473613.1 | recombinase RecA | Machinery gene |
| ABR329_RS05610 (ABR329_05610) | - | 1287622..1287855 (-) | 234 | WP_007052642.1 | DUF3046 domain-containing protein | - |
| ABR329_RS05615 (ABR329_05615) | - | 1287967..1288482 (-) | 516 | WP_007052641.1 | helix-turn-helix transcriptional regulator | - |
| ABR329_RS05620 (ABR329_05620) | - | 1288542..1289075 (-) | 534 | WP_007052640.1 | CinA family protein | - |
| ABR329_RS05625 (ABR329_05625) | pgsA | 1289087..1289737 (-) | 651 | WP_007058588.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| ABR329_RS05630 (ABR329_05630) | - | 1289899..1292808 (-) | 2910 | WP_007056211.1 | DNA translocase FtsK | - |
| ABR329_RS05635 (ABR329_05635) | - | 1293020..1293769 (+) | 750 | WP_007056215.1 | Fic family protein | - |
| ABR329_RS05640 (ABR329_05640) | miaA | 1293803..1294789 (-) | 987 | WP_007052636.1 | tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA | - |
| ABR329_RS05645 (ABR329_05645) | miaB | 1294800..1296254 (-) | 1455 | WP_350345197.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| ABR329_RS05650 (ABR329_05650) | - | 1296386..1297126 (+) | 741 | WP_007056209.1 | GTP pyrophosphokinase family protein | - |
| ABR329_RS05655 (ABR329_05655) | - | 1297159..1298175 (-) | 1017 | WP_007052632.1 | DMT family transporter | - |
| ABR329_RS05660 (ABR329_05660) | - | 1298315..1299214 (-) | 900 | WP_007052631.1 | Bax inhibitor-1/YccA family protein | - |
| ABR329_RS05665 (ABR329_05665) | - | 1299395..1300240 (-) | 846 | WP_007057205.1 | DUF5067 domain-containing protein | - |
| ABR329_RS05670 (ABR329_05670) | - | 1300575..1301807 (+) | 1233 | WP_007056207.1 | histidine kinase | - |
| ABR329_RS05675 (ABR329_05675) | - | 1301842..1302567 (+) | 726 | WP_007056206.1 | response regulator transcription factor | - |
| ABR329_RS05680 (ABR329_05680) | - | 1302607..1303248 (+) | 642 | WP_007052627.1 | GNAT family N-acetyltransferase | - |
| ABR329_RS05685 (ABR329_05685) | - | 1303338..1305443 (+) | 2106 | WP_206873892.1 | DUF262 domain-containing protein | - |
| ABR329_RS05690 (ABR329_05690) | - | 1305505..1305996 (-) | 492 | WP_007054468.1 | PIN domain-containing protein | - |
| ABR329_RS05695 (ABR329_05695) | - | 1305996..1306358 (-) | 363 | WP_008783109.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| ABR329_RS05700 (ABR329_05700) | acnA | 1306504..1309203 (-) | 2700 | WP_007054466.1 | aconitate hydratase AcnA | - |
| ABR329_RS05705 (ABR329_05705) | - | 1309324..1311837 (-) | 2514 | WP_350345198.1 | HAD-IC family P-type ATPase | - |
| ABR329_RS05710 (ABR329_05710) | - | 1311928..1312623 (-) | 696 | WP_023658436.1 | hypothetical protein | - |
| ABR329_RS05715 (ABR329_05715) | - | 1312635..1313903 (-) | 1269 | WP_007055251.1 | TRAM domain-containing protein | - |
| ABR329_RS05720 (ABR329_05720) | - | 1313893..1314651 (-) | 759 | WP_008783114.1 | DUF3159 domain-containing protein | - |
| ABR329_RS05725 (ABR329_05725) | - | 1314667..1315521 (-) | 855 | WP_237970407.1 | DUF3710 domain-containing protein | - |
| ABR329_RS05730 (ABR329_05730) | - | 1315589..1316449 (-) | 861 | WP_015512141.1 | exodeoxyribonuclease III | - |
| ABR329_RS05735 (ABR329_05735) | - | 1316553..1318562 (-) | 2010 | WP_350345199.1 | ABC transporter ATP-binding protein | - |
| ABR329_RS05740 (ABR329_05740) | - | 1318585..1319589 (-) | 1005 | WP_101025773.1 | ABC transporter permease | - |
| ABR329_RS05745 (ABR329_05745) | - | 1319608..1320534 (-) | 927 | WP_101025774.1 | ABC transporter permease | - |
| ABR329_RS05750 (ABR329_05750) | - | 1320833..1322473 (-) | 1641 | WP_350345200.1 | ABC transporter substrate-binding protein | - |
| ABR329_RS05755 (ABR329_05755) | - | 1322725..1323798 (-) | 1074 | WP_007058617.1 | tyrosine recombinase XerC | - |
| ABR329_RS05760 (ABR329_05760) | - | 1323833..1324090 (-) | 258 | WP_007052610.1 | DUF6725 family protein | - |
| ABR329_RS05765 (ABR329_05765) | - | 1324302..1325366 (-) | 1065 | WP_350345201.1 | prephenate dehydrogenase/arogenate dehydrogenase family protein | - |
| ABR329_RS05770 (ABR329_05770) | - | 1325360..1326337 (-) | 978 | WP_350345202.1 | prephenate dehydratase domain-containing protein | - |
| ABR329_RS05775 (ABR329_05775) | - | 1326417..1326863 (-) | 447 | WP_007052607.1 | alcohol dehydrogenase | - |
| ABR329_RS05780 (ABR329_05780) | typA | 1326963..1328894 (-) | 1932 | WP_007052606.1 | translational GTPase TypA | - |
| ABR329_RS05785 (ABR329_05785) | - | 1329209..1330558 (-) | 1350 | WP_007052605.1 | MFS transporter | - |
| ABR329_RS05790 (ABR329_05790) | - | 1330590..1331837 (-) | 1248 | WP_007054451.1 | cysteine desulfurase family protein | - |
| ABR329_RS05795 (ABR329_05795) | nadC | 1331840..1332733 (-) | 894 | WP_007052603.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ABR329_RS05800 (ABR329_05800) | nadB | 1332737..1334368 (-) | 1632 | WP_007054450.1 | L-aspartate oxidase | - |
| ABR329_RS05805 (ABR329_05805) | nadA | 1334460..1335740 (-) | 1281 | WP_007052601.1 | quinolinate synthase NadA | - |
| ABR329_RS05810 (ABR329_05810) | - | 1335800..1336627 (-) | 828 | WP_350345203.1 | NUDIX domain-containing protein | - |
| ABR329_RS05815 (ABR329_05815) | scpB | 1336759..1337475 (-) | 717 | WP_217052134.1 | SMC-Scp complex subunit ScpB | - |
| ABR329_RS05820 (ABR329_05820) | - | 1337488..1338402 (-) | 915 | WP_007052598.1 | ScpA family protein | - |
| ABR329_RS05825 (ABR329_05825) | - | 1338421..1339260 (-) | 840 | WP_007052597.1 | AAA family ATPase | - |
| ABR329_RS05830 (ABR329_05830) | - | 1339522..1342368 (-) | 2847 | WP_065454804.1 | ABC transporter ATP-binding protein/permease | - |
| ABR329_RS05835 (ABR329_05835) | xerD | 1342496..1343422 (-) | 927 | WP_060867950.1 | site-specific tyrosine recombinase XerD | - |
| ABR329_RS05840 (ABR329_05840) | rplT | 1343492..1343875 (-) | 384 | WP_007052594.1 | 50S ribosomal protein L20 | - |
| ABR329_RS05845 (ABR329_05845) | rpmI | 1343928..1344122 (-) | 195 | WP_007052593.1 | 50S ribosomal protein L35 | - |
| ABR329_RS05850 (ABR329_05850) | infC | 1344103..1344825 (-) | 723 | WP_032682519.1 | translation initiation factor IF-3 | - |
| ABR329_RS05855 (ABR329_05855) | - | 1345136..1345861 (+) | 726 | WP_202570054.1 | thiamine diphosphokinase | - |
| ABR329_RS05860 (ABR329_05860) | gap | 1346102..1347160 (+) | 1059 | WP_007052589.1 | type I glyceraldehyde-3-phosphate dehydrogenase | - |
| ABR329_RS05865 (ABR329_05865) | ybaK | 1347254..1347763 (+) | 510 | WP_007054439.1 | Cys-tRNA(Pro) deacylase | - |
| ABR329_RS05870 (ABR329_05870) | - | 1347803..1348816 (-) | 1014 | WP_256693678.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| ABR329_RS05875 (ABR329_05875) | - | 1349086..1350042 (+) | 957 | WP_007052585.1 | aldose 1-epimerase family protein | - |
| ABR329_RS05880 (ABR329_05880) | - | 1350167..1351111 (+) | 945 | WP_288648695.1 | aldose 1-epimerase family protein | - |
| ABR329_RS05885 (ABR329_05885) | - | 1351377..1351697 (-) | 321 | WP_007055264.1 | hypothetical protein | - |
| ABR329_RS05890 (ABR329_05890) | - | 1351697..1352485 (-) | 789 | WP_181991241.1 | sigma-70 family RNA polymerase sigma factor | - |
| ABR329_RS05895 (ABR329_05895) | - | 1352624..1354177 (+) | 1554 | WP_350345204.1 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase | - |
| ABR329_RS05900 (ABR329_05900) | - | 1354299..1355294 (+) | 996 | WP_013410747.1 | GNAT family N-acetyltransferase | - |
| ABR329_RS05905 (ABR329_05905) | smc | 1355413..1359090 (-) | 3678 | WP_350345205.1 | chromosome segregation protein SMC | - |
| ABR329_RS05910 (ABR329_05910) | - | 1359151..1360740 (-) | 1590 | WP_350345206.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| ABR329_RS05915 (ABR329_05915) | - | 1361995..1362846 (+) | 852 | WP_007057256.1 | hypothetical protein | - |
| ABR329_RS05920 (ABR329_05920) | - | 1363150..1364745 (+) | 1596 | WP_117717308.1 | aminopeptidase P family protein | - |
| ABR329_RS05925 (ABR329_05925) | - | 1364794..1365315 (+) | 522 | WP_007057255.1 | NUDIX domain-containing protein | - |
| ABR329_RS05930 (ABR329_05930) | - | 1365365..1367074 (-) | 1710 | WP_007052568.1 | ABC transporter ATP-binding protein | - |
| ABR329_RS05935 (ABR329_05935) | - | 1367078..1368247 (-) | 1170 | WP_007052567.1 | ABC transporter permease | - |
| ABR329_RS05940 (ABR329_05940) | - | 1368249..1369340 (-) | 1092 | WP_007052566.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 397 a.a. Molecular weight: 41816.56 Da Isoelectric Point: 5.8610
>NTDB_id=1010923 ABR329_RS05605 WP_041473613.1 1286128..1287321(-) (recA) [Bifidobacterium longum strain PMC72]
MALETKPAKDPAAEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPEQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVSAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDGEAAAAAAVSEAAAADVAKDSKAAAAPAAKTTRAKAGTAKA
MALETKPAKDPAAEDKHELDPKRKAALDTALAQVEKSFGKGSAMRLGDQPEQNVEVIPTGSLALDMALGIGGLPKGRIVE
IYGPESSGKTTLALHVVANAQKKGGVSAYIDAEHALDPAYARKLGVDTDSLIVSQPDNGEQALEIADMLIRSGALDVIVI
DSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKMTGALAQAGTTAIFINQLREKIGVFFGNPETTTGGKALKFYASVRL
DIRRIQTLKNGDEAVGNRTRVKVVKNKMAPPFKSAEFDMLYGEGISREGSVIDMAQQVGVVKKSGSWFTYEGDQLGQGRE
KVRQFLKDNPAITEEIENKVKAEFGLIGSADQFAEDGEAAAAAAVSEAAAADVAKDSKAAAAPAAKTTRAKAGTAKA
Nucleotide
Download Length: 1194 bp
>NTDB_id=1010923 ABR329_RS05605 WP_041473613.1 1286128..1287321(-) (recA) [Bifidobacterium longum strain PMC72]
ATGGCACTTGAGACCAAGCCGGCCAAGGACCCGGCAGCCGAGGACAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACCGCGCTGGCGCAGGTCGAGAAGAGTTTTGGCAAAGGTTCCGCAATGCGACTGGGCGACCAGCCCGAGCAGAACG
TCGAGGTGATTCCCACCGGTTCGTTGGCTCTCGATATGGCGCTCGGCATCGGCGGCCTACCCAAGGGCCGCATCGTGGAG
ATCTACGGCCCCGAATCATCCGGTAAGACCACGCTCGCATTGCATGTGGTGGCCAATGCCCAGAAGAAGGGCGGCGTGTC
GGCCTACATCGATGCCGAACACGCGCTCGACCCGGCCTACGCCCGCAAGCTCGGCGTGGACACCGACTCACTCATCGTCT
CCCAGCCGGATAACGGCGAGCAGGCCCTCGAAATCGCTGACATGCTGATTCGCTCCGGTGCGCTTGACGTCATCGTCATC
GACTCGGTCGCCGCTTTGGTGCCGAAGGCCGAAATCGAAGGCGAAATGGGAGACAGCCATGTTGGTTTGCAGGCCCGACT
CATGAGTCAGGCGCTGCGCAAGATGACCGGCGCATTGGCTCAGGCCGGCACCACCGCCATCTTCATCAACCAGCTGCGTG
AGAAGATCGGCGTGTTCTTCGGCAACCCTGAAACCACCACCGGTGGTAAAGCTCTGAAGTTCTACGCCTCCGTGCGTCTC
GACATCCGCCGCATCCAGACCTTGAAGAACGGCGACGAAGCGGTGGGCAACCGCACGCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCTTTCAAGTCCGCCGAATTCGACATGCTCTACGGTGAAGGCATTTCCCGTGAGGGCTCGGTGATCGACA
TGGCCCAGCAGGTTGGCGTGGTCAAGAAGTCCGGTTCGTGGTTCACCTATGAGGGTGATCAGCTCGGTCAGGGACGAGAG
AAGGTCCGTCAGTTCCTTAAGGACAACCCGGCCATCACCGAGGAGATTGAGAACAAGGTCAAGGCCGAGTTCGGTCTGAT
CGGTTCCGCCGATCAGTTCGCGGAAGATGGCGAAGCCGCAGCAGCGGCCGCCGTCAGCGAGGCTGCTGCGGCTGACGTGG
CCAAGGACAGCAAGGCCGCAGCGGCGCCTGCTGCCAAAACGACCCGTGCCAAGGCCGGCACAGCTAAGGCCTGA
ATGGCACTTGAGACCAAGCCGGCCAAGGACCCGGCAGCCGAGGACAAGCACGAGCTCGATCCCAAGCGCAAGGCGGCGCT
GGACACCGCGCTGGCGCAGGTCGAGAAGAGTTTTGGCAAAGGTTCCGCAATGCGACTGGGCGACCAGCCCGAGCAGAACG
TCGAGGTGATTCCCACCGGTTCGTTGGCTCTCGATATGGCGCTCGGCATCGGCGGCCTACCCAAGGGCCGCATCGTGGAG
ATCTACGGCCCCGAATCATCCGGTAAGACCACGCTCGCATTGCATGTGGTGGCCAATGCCCAGAAGAAGGGCGGCGTGTC
GGCCTACATCGATGCCGAACACGCGCTCGACCCGGCCTACGCCCGCAAGCTCGGCGTGGACACCGACTCACTCATCGTCT
CCCAGCCGGATAACGGCGAGCAGGCCCTCGAAATCGCTGACATGCTGATTCGCTCCGGTGCGCTTGACGTCATCGTCATC
GACTCGGTCGCCGCTTTGGTGCCGAAGGCCGAAATCGAAGGCGAAATGGGAGACAGCCATGTTGGTTTGCAGGCCCGACT
CATGAGTCAGGCGCTGCGCAAGATGACCGGCGCATTGGCTCAGGCCGGCACCACCGCCATCTTCATCAACCAGCTGCGTG
AGAAGATCGGCGTGTTCTTCGGCAACCCTGAAACCACCACCGGTGGTAAAGCTCTGAAGTTCTACGCCTCCGTGCGTCTC
GACATCCGCCGCATCCAGACCTTGAAGAACGGCGACGAAGCGGTGGGCAACCGCACGCGCGTCAAGGTGGTCAAGAACAA
GATGGCCCCGCCTTTCAAGTCCGCCGAATTCGACATGCTCTACGGTGAAGGCATTTCCCGTGAGGGCTCGGTGATCGACA
TGGCCCAGCAGGTTGGCGTGGTCAAGAAGTCCGGTTCGTGGTTCACCTATGAGGGTGATCAGCTCGGTCAGGGACGAGAG
AAGGTCCGTCAGTTCCTTAAGGACAACCCGGCCATCACCGAGGAGATTGAGAACAAGGTCAAGGCCGAGTTCGGTCTGAT
CGGTTCCGCCGATCAGTTCGCGGAAGATGGCGAAGCCGCAGCAGCGGCCGCCGTCAGCGAGGCTGCTGCGGCTGACGTGG
CCAAGGACAGCAAGGCCGCAGCGGCGCCTGCTGCCAAAACGACCCGTGCCAAGGCCGGCACAGCTAAGGCCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.