Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABOD76_RS08980 Genome accession   NZ_CP158299
Coordinates   779818..780897 (-) Length   359 a.a.
NCBI ID   WP_350244492.1    Uniprot ID   A0AAU7UDH2
Organism   Deinococcus sonorensis KR-87     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 774818..785897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABOD76_RS08960 (ABOD76_08925) - 774832..777759 (-) 2928 WP_350244488.1 EAL domain-containing protein -
  ABOD76_RS08965 (ABOD76_08930) - 777939..778625 (-) 687 WP_350244489.1 DUF305 domain-containing protein -
  ABOD76_RS08970 (ABOD76_08935) bshB1 778665..779381 (-) 717 WP_350244490.1 bacillithiol biosynthesis deacetylase BshB1 -
  ABOD76_RS08975 (ABOD76_08940) rpmF 779441..779632 (-) 192 WP_350244491.1 50S ribosomal protein L32 -
  ABOD76_RS08980 (ABOD76_08945) recA 779818..780897 (-) 1080 WP_350244492.1 recombinase RecA Machinery gene
  ABOD76_RS08985 (ABOD76_08950) thpR 780890..781543 (-) 654 WP_350244493.1 RNA 2',3'-cyclic phosphodiesterase -
  ABOD76_RS08990 (ABOD76_08955) - 781642..782574 (-) 933 WP_350244494.1 CAP domain-containing protein -
  ABOD76_RS08995 (ABOD76_08960) - 783008..784093 (+) 1086 WP_350244495.1 PP2C family serine/threonine-protein phosphatase -
  ABOD76_RS09000 (ABOD76_08965) - 784090..784467 (+) 378 WP_350244496.1 RidA family protein -
  ABOD76_RS09005 (ABOD76_08970) menC 784499..785635 (+) 1137 WP_350244497.1 o-succinylbenzoate synthase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38425.13 Da        Isoelectric Point: 5.6376

>NTDB_id=1010479 ABOD76_RS08980 WP_350244492.1 779818..780897(-) (recA) [Deinococcus sonorensis KR-87]
MDKTIDKIDKTVDKERSKAIDTAMSQIEKQFGKGAIMRLGADSRLDVQTISTGSLSLDLALGVGGIPKGRVTEIYGPESG
GKTTLALSIIAQAQRDGGTAAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAVDIVVVDSVAALT
PRAEIEGEMGDSLPGLQARLMSQALRKLTGVLSKTNTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRRIGQ
PVKTGNDSVGTTVKIKTVKNKVAPPFKEVELTLLFGKGFDQLSDLVTLAADMDIVKKAGSFYSYGDERIGQGKEKAIQYI
AERPAMEREIRDRVLATIKSGAKPELVKEMAPAEMGADA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=1010479 ABOD76_RS08980 WP_350244492.1 779818..780897(-) (recA) [Deinococcus sonorensis KR-87]
ATGGATAAGACCATCGACAAGATCGACAAGACCGTAGACAAGGAGCGCTCCAAGGCCATCGACACGGCCATGAGCCAGAT
CGAGAAGCAGTTCGGCAAGGGCGCCATCATGCGCCTGGGCGCCGACAGCCGGCTGGACGTGCAGACCATCAGCACCGGCA
GCCTCTCGCTGGACCTCGCGCTCGGCGTGGGCGGCATTCCCAAGGGCCGCGTCACCGAGATCTACGGCCCCGAGTCGGGC
GGCAAGACCACCCTGGCGCTGAGCATCATCGCGCAGGCGCAGCGCGACGGCGGCACGGCCGCTTTCATTGACGCCGAGCA
CGCGCTGGACCCGGTGTACGCCCGCGCCCTGGGCGTCAACACTGACGAACTGCTGGTGTCGCAGCCGGACAACGGCGAGC
AGGCGCTAGAGATCATGGAGCTGCTGGTGCGTTCGGGCGCCGTGGACATCGTGGTGGTGGACAGCGTGGCGGCCCTGACC
CCCCGCGCCGAGATCGAGGGCGAGATGGGCGACAGCCTGCCGGGCCTGCAGGCCCGCCTGATGTCGCAGGCGCTGCGCAA
GCTGACCGGCGTGCTGTCCAAGACCAACACCGCCGCCATCTTCATCAACCAGGTGCGCGAGAAGATCGGCGTGATGTACG
GCAACCCCGAGACCACCACCGGTGGCCGGGCGCTGAAGTTCTACGCCAGCGTGCGTCTGGACGTGCGCCGCATCGGGCAG
CCGGTCAAGACCGGCAACGACTCGGTCGGCACCACCGTCAAGATCAAGACCGTCAAGAACAAGGTGGCGCCGCCCTTCAA
GGAAGTGGAGCTGACGCTGCTGTTCGGCAAGGGCTTCGACCAGCTCTCGGACCTGGTGACGCTGGCCGCCGACATGGACA
TCGTCAAGAAGGCCGGCAGCTTCTACAGCTACGGCGACGAGCGCATCGGCCAGGGCAAGGAGAAGGCCATCCAGTACATC
GCCGAGCGTCCGGCGATGGAGCGCGAGATCCGCGACCGGGTACTGGCCACCATCAAGTCGGGTGCCAAGCCGGAACTGGT
CAAGGAGATGGCCCCGGCCGAGATGGGCGCCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

87.5

91.365

0.799
  recA Acinetobacter baumannii D1279779

64.776

93.315

0.604
  recA Streptococcus mitis SK321

62.687

93.315

0.585
  recA Streptococcus pneumoniae Rx1

62.687

93.315

0.585
  recA Streptococcus pneumoniae D39

62.687

93.315

0.585
  recA Streptococcus pneumoniae R6

62.687

93.315

0.585
  recA Streptococcus pneumoniae TIGR4

62.687

93.315

0.585
  recA Streptococcus mitis NCTC 12261

62.687

93.315

0.585
  recA Glaesserella parasuis strain SC1401

62.202

93.593

0.582
  recA Acinetobacter baylyi ADP1

65.204

88.858

0.579
  recA Streptococcus pyogenes NZ131

61.791

93.315

0.577
  recA Vibrio cholerae strain A1552

59.942

95.265

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.942

95.265

0.571
  recA Streptococcus mutans UA159

60.896

93.315

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.329

92.201

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

62.813

89.136

0.56
  recA Pseudomonas stutzeri DSM 10701

57.759

96.936

0.56
  recA Lactococcus lactis subsp. cremoris KW2

58.333

93.593

0.546
  recA Helicobacter pylori 26695

58.788

91.922

0.54
  recA Helicobacter pylori strain NCTC11637

58.788

91.922

0.54
  recA Ralstonia pseudosolanacearum GMI1000

62.013

85.794

0.532
  recA Neisseria gonorrhoeae MS11

58.824

89.972

0.529
  recA Neisseria gonorrhoeae MS11

58.824

89.972

0.529
  recA Neisseria gonorrhoeae strain FA1090

58.824

89.972

0.529
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.375

89.136

0.529
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.402

91.365

0.515

Multiple sequence alignment