Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAF463_RS14975 Genome accession   NZ_CP158292
Coordinates   3228437..3229507 (-) Length   356 a.a.
NCBI ID   WP_350261013.1    Uniprot ID   -
Organism   Pantoea sp. BJ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3223437..3234507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAF463_RS14960 (AAF463_14930) csrA 3224608..3224793 (-) 186 WP_008104508.1 carbon storage regulator CsrA -
  AAF463_RS14965 (AAF463_14935) alaS 3225043..3227670 (-) 2628 WP_350261011.1 alanine--tRNA ligase -
  AAF463_RS14970 (AAF463_14940) - 3227806..3228321 (-) 516 WP_350261012.1 regulatory protein RecX -
  AAF463_RS14975 (AAF463_14945) recA 3228437..3229507 (-) 1071 WP_350261013.1 recombinase RecA Machinery gene
  AAF463_RS14980 (AAF463_14950) pncC 3229601..3230095 (-) 495 WP_110868324.1 nicotinamide-nucleotide amidase -
  AAF463_RS14985 (AAF463_14955) tam 3230198..3230974 (-) 777 WP_192411990.1 trans-aconitate 2-methyltransferase -
  AAF463_RS14990 (AAF463_14960) - 3231141..3232028 (+) 888 WP_350261014.1 dihydrodipicolinate synthase family protein -
  AAF463_RS14995 (AAF463_14965) - 3232061..3232396 (-) 336 WP_192236517.1 zinc ribbon domain-containing protein YjdM -
  AAF463_RS15000 (AAF463_14970) mltB 3232482..3233564 (-) 1083 WP_222234634.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38084.49 Da        Isoelectric Point: 4.9628

>NTDB_id=1010466 AAF463_RS14975 WP_350261013.1 3228437..3229507(-) (recA) [Pantoea sp. BJ2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IASAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGEKIGQGKANSTNFLKDNPAIANEI
DKKLRDLLLSGDVAAADTAKISADDREEASETNEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1010466 AAF463_RS14975 WP_350261013.1 3228437..3229507(-) (recA) [Pantoea sp. BJ2]
ATGGCGATCGACGAGAACAAACAGAAGGCTTTAGCTGCCGCACTGGGCCAGATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCTTGGGTGAAGACCGCTCAATGGATGTCGAAACCATCTCTACCGGCTCACTGTCACTGGATATCGCGCTGGGCG
CGGGTGGCTTGCCGATGGGCCGTATCGTTGAGATTTACGGACCAGAATCTTCGGGTAAAACCACGCTGACGCTGCAGGTT
ATTGCTTCTGCACAGCGTAAAGGTAAAACCTGTGCCTTTATCGATGCTGAGCACGCACTGGATCCGGTGTACGCGAAAAA
ACTGGGCGTTGATATCGATAACCTGCTGTGTTCACAGCCGGATACCGGTGAGCAAGCGCTGGAGATTTGTGATGCGCTGG
CGCGTTCAGGCGCAGTTGACGTCATCATCGTCGACTCCGTGGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGCGAGATT
GGCGATTCGCACATGGGTCTGGCCGCTCGTATGATGAGCCAGGCAATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACAACAGGCGGTA
ACGCACTGAAATTCTACGCTTCTGTTCGTCTGGATATCCGCCGTATCGGTGCGATTAAAGAGGGCGACGAAGTGGTAGGT
AGCGAAACCCGCGTGAAAGTCGTGAAGAACAAAGTTGCGGCACCGTTTAAGCAGGCTGAATTCCAAATCATGTACGGAGA
AGGTATCAACACCTTTGGCGAGCTGGTGGATCTTGGCGTGAAGCACAAACTGGTTGAGAAAGCCGGCGCGTGGTACAGCT
ACAACGGTGAGAAGATTGGTCAGGGTAAAGCTAACTCCACCAACTTCCTTAAAGATAACCCGGCGATTGCGAATGAAATC
GACAAGAAGCTGCGTGACTTACTGCTAAGTGGTGATGTCGCCGCCGCAGACACCGCGAAAATCTCCGCGGATGATCGCGA
AGAAGCCAGCGAAACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

80.791

99.438

0.803
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.791

99.438

0.803
  recA Pseudomonas stutzeri DSM 10701

74.107

94.382

0.699
  recA Acinetobacter baumannii D1279779

70.809

97.191

0.688
  recA Acinetobacter baylyi ADP1

73.171

92.135

0.674
  recA Glaesserella parasuis strain SC1401

67.521

98.596

0.666
  recA Neisseria gonorrhoeae MS11

69.018

91.573

0.632
  recA Neisseria gonorrhoeae MS11

69.018

91.573

0.632
  recA Neisseria gonorrhoeae strain FA1090

69.018

91.573

0.632
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.36

0.621
  recA Streptococcus pneumoniae TIGR4

58.873

99.719

0.587
  recA Streptococcus pneumoniae Rx1

58.873

99.719

0.587
  recA Streptococcus pneumoniae D39

58.873

99.719

0.587
  recA Streptococcus pneumoniae R6

58.873

99.719

0.587
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.385

91.292

0.579
  recA Helicobacter pylori strain NCTC11637

62.691

91.854

0.576
  recA Streptococcus mitis NCTC 12261

63.158

90.73

0.573
  recA Streptococcus mutans UA159

62.769

91.292

0.573
  recA Helicobacter pylori 26695

62.385

91.854

0.573
  recA Streptococcus pyogenes NZ131

62.462

91.292

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.169

0.57
  recA Streptococcus mitis SK321

62.848

90.73

0.57
  recA Latilactobacillus sakei subsp. sakei 23K

60.237

94.663

0.57
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.258

0.559
  recA Lactococcus lactis subsp. cremoris KW2

61.61

90.73

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.021

91.854

0.542

Multiple sequence alignment