Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABFV67_RS11250 Genome accession   NZ_CP158116
Coordinates   2449296..2450345 (-) Length   349 a.a.
NCBI ID   WP_072668909.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain IS021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2444296..2455345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFV67_RS11230 (ABFV67_11230) csrA 2444322..2444519 (-) 198 WP_115152690.1 carbon storage regulator CsrA -
  ABFV67_RS11235 (ABFV67_11235) - 2444610..2445797 (-) 1188 WP_158137833.1 aspartate kinase -
  ABFV67_RS11240 (ABFV67_11240) alaS 2446019..2448601 (-) 2583 WP_332396259.1 alanine--tRNA ligase -
  ABFV67_RS11245 (ABFV67_11245) recX 2448733..2449233 (-) 501 WP_187003731.1 recombination regulator RecX -
  ABFV67_RS11250 (ABFV67_11250) recA 2449296..2450345 (-) 1050 WP_072668909.1 recombinase RecA Machinery gene
  ABFV67_RS11255 (ABFV67_11255) pncC 2450477..2450968 (-) 492 WP_161438171.1 nicotinamide-nucleotide amidase -
  ABFV67_RS11260 (ABFV67_11260) - 2451069..2452196 (-) 1128 WP_342639065.1 sulfate/molybdate ABC transporter ATP-binding protein -
  ABFV67_RS11265 (ABFV67_11265) cysW 2452193..2453056 (-) 864 WP_004395993.1 sulfate ABC transporter permease subunit CysW -
  ABFV67_RS11270 (ABFV67_11270) cysT 2453067..2453912 (-) 846 WP_004395994.1 sulfate/thiosulfate ABC transporter permease CysT -
  ABFV67_RS11275 (ABFV67_11275) cysP 2453990..2454991 (-) 1002 WP_342639066.1 thiosulfate ABC transporter substrate-binding protein CysP -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37787.34 Da        Isoelectric Point: 4.9753

>NTDB_id=1009830 ABFV67_RS11250 WP_072668909.1 2449296..2450345(-) (recA) [Vibrio metschnikovii strain IS021]
MDENKQKALAAALGQIEKQFGKGSIMLLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
SAQREGKTCAFIDAEHALDPIYAQKLGVKINDLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLIEKSGAWYSYNGDKIGQGKANACKFLREHPEASKAIDS
KLREMLLSPEQVPLDEPEFGVIPEQEEEL

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=1009830 ABFV67_RS11250 WP_072668909.1 2449296..2450345(-) (recA) [Vibrio metschnikovii strain IS021]
ATGGACGAGAATAAACAAAAAGCCTTAGCCGCAGCGCTTGGTCAAATTGAAAAGCAATTCGGTAAAGGATCTATCATGCT
GCTGGGTGATAACCGCACGATGGATGTCGAGACGATTTCAACCGGTTCTCTTTCTCTCGACATCGCCTTGGGTGCTGGCG
GTCTACCGATGGGGCGGATTGTTGAAGTTTATGGTCCTGAATCTTCGGGTAAAACAACTTTAACTCTTGAGTTAATTGCT
TCTGCACAACGTGAAGGTAAAACCTGTGCGTTTATTGATGCTGAACACGCTCTTGATCCTATTTATGCTCAGAAGCTGGG
TGTGAAGATCAACGATCTACTTGTTTCTCAGCCAGATACTGGTGAACAAGCACTGGAAATTTGTGATGCACTGGCGCGTT
CTGGTGCGGTCGACGTCATCGTCGTTGACTCTGTTGCTGCGCTAACACCGAAAGCCGAAATTGAAGGTGAAATGGGTGAT
AGCCACATGGGCCTCCAAGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTGACAGGTAACTTGAAGCAGTCGAACTGTAT
GTGTATTTTCATCAACCAAATTCGGATGAAAATTGGCGTGATGTTTGGCAACCCAGAAACCACAACGGGTGGTAATGCGC
TTAAGTTCTACGCTTCGGTTCGCTTAGATATTCGTCGTACAGGCGCGATTAAAGAAGGCGAAGAAGTGGTGGGTAATGAA
ACCCGCATTAAAGTCGTTAAAAATAAAATCGCCGCCCCGTTTAAAGAAGCCAATACTCAAATCATGTACGGACAAGGGTT
TAACCGTGAGGGCGAGTTGGTCGATTTAGGGGTTAAACATAAGCTGATTGAAAAATCCGGTGCTTGGTACAGCTACAATG
GCGATAAAATTGGCCAAGGTAAAGCCAATGCTTGTAAGTTTTTGCGTGAGCATCCTGAAGCCAGCAAGGCGATTGATAGT
AAATTGCGTGAGATGCTACTCAGCCCTGAACAAGTTCCGCTTGATGAGCCTGAATTTGGTGTCATACCTGAGCAGGAAGA
AGAGCTGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.235

100

0.903
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.235

100

0.903
  recA Pseudomonas stutzeri DSM 10701

74.006

93.696

0.693
  recA Acinetobacter baylyi ADP1

72.256

93.983

0.679
  recA Acinetobacter baumannii D1279779

71.951

93.983

0.676
  recA Glaesserella parasuis strain SC1401

70.552

93.41

0.659
  recA Neisseria gonorrhoeae MS11

68.712

93.41

0.642
  recA Neisseria gonorrhoeae MS11

68.712

93.41

0.642
  recA Neisseria gonorrhoeae strain FA1090

68.712

93.41

0.642
  recA Ralstonia pseudosolanacearum GMI1000

71.704

89.112

0.639
  recA Helicobacter pylori strain NCTC11637

60

97.421

0.585
  recA Helicobacter pylori 26695

59.706

97.421

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

91.977

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

57.265

100

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.009

91.404

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

95.129

0.57
  recA Streptococcus pneumoniae D39

61.61

92.55

0.57
  recA Streptococcus pneumoniae R6

61.61

92.55

0.57
  recA Streptococcus pneumoniae TIGR4

61.61

92.55

0.57
  recA Streptococcus pneumoniae Rx1

61.61

92.55

0.57
  recA Streptococcus mutans UA159

60.615

93.123

0.564
  recA Streptococcus pyogenes NZ131

60.308

93.123

0.562
  recA Streptococcus mitis SK321

60.681

92.55

0.562
  recA Streptococcus mitis NCTC 12261

60.681

92.55

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

91.977

0.553
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.55

0.55

Multiple sequence alignment