Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   H0510_RS01890 Genome accession   NZ_LR822019
Coordinates   343956..344618 (+) Length   220 a.a.
NCBI ID   WP_179966927.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_772     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338956..349618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0510_RS01865 (STHERMO_0390) - 339275..339985 (+) 711 WP_002947183.1 ABC transporter ATP-binding protein -
  H0510_RS01870 - 340121..340780 (+) 660 Protein_320 CBS domain-containing protein -
  H0510_RS01875 (STHERMO_0394) cysK 340947..341873 (-) 927 WP_014607992.1 cysteine synthase A -
  H0510_RS01880 (STHERMO_0395) - 341975..342601 (-) 627 WP_002949745.1 YigZ family protein -
  H0510_RS01885 (STHERMO_0396) comFA/cflA 342656..343975 (+) 1320 WP_179966926.1 DEAD/DEAH box helicase Machinery gene
  H0510_RS01890 (STHERMO_0397) comFC/cflB 343956..344618 (+) 663 WP_179966927.1 ComF family protein Machinery gene
  H0510_RS01895 (STHERMO_0398) hpf 344697..345245 (+) 549 WP_022096635.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26129.44 Da        Isoelectric Point: 8.8326

>NTDB_id=1009830 H0510_RS01890 WP_179966927.1 343956..344618(+) (comFC/cflB) [Streptococcus thermophilus isolate STH_CIRM_772]
MKCLLCNEWIEPVAQLSDLIMFKQRREYSCEDCKAQFKKLGKARCSNCYKIIDGNSCFDCKIWAKKGYIPKHFAIYRYEE
NMKEYFSRYKFMGDYCLRKIFQQEIKANLKSFFKKGYILVPVPLSEERLEERGFNQVKGLLEGIPYKNIFEKREIEKQSS
RTREERLSQDNSFSLKKDIELPSKIIIIDDIYTTGSTLYQMVKLLDDLDVKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=1009830 H0510_RS01890 WP_179966927.1 343956..344618(+) (comFC/cflB) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGAAGTGTCTACTATGTAATGAATGGATTGAACCAGTAGCTCAATTAAGTGATTTAATTATGTTTAAACAAAGAAGAGA
GTATTCTTGTGAAGATTGTAAAGCTCAATTTAAAAAGCTTGGGAAGGCGAGATGTTCAAATTGTTATAAAATAATAGATG
GAAATAGTTGCTTTGATTGCAAAATTTGGGCGAAAAAAGGCTATATTCCAAAACATTTTGCCATTTATCGTTATGAAGAA
AACATGAAAGAGTATTTTAGTCGCTATAAATTTATGGGAGATTATTGTCTTAGAAAAATATTTCAACAAGAAATTAAAGC
CAATTTAAAGTCTTTTTTTAAGAAAGGTTATATCCTAGTACCTGTCCCCTTGTCGGAAGAACGCCTGGAAGAGAGAGGAT
TCAATCAAGTTAAAGGATTACTAGAGGGAATCCCCTATAAAAACATTTTTGAAAAAAGAGAGATCGAGAAGCAATCCTCG
AGAACACGCGAAGAGCGGTTAAGTCAAGATAATTCTTTCAGTTTGAAAAAAGATATTGAGCTACCAAGTAAGATCATCAT
AATCGATGATATTTACACAACAGGATCTACCCTGTATCAAATGGTCAAACTATTAGATGATTTAGATGTCAAAGAAGTTT
TGACATTTTCCTTAGCTAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

44.595

100

0.45
  comFC/cflB Streptococcus mitis SK321

44.144

100

0.445
  comFC/cflB Streptococcus pneumoniae Rx1

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae D39

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae R6

43.243

100

0.436
  comFC/cflB Streptococcus pneumoniae TIGR4

43.243

100

0.436

Multiple sequence alignment