Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABN020_RS11800 Genome accession   NZ_CP158110
Coordinates   2464949..2466130 (-) Length   393 a.a.
NCBI ID   WP_005937946.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain 6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2459949..2471130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN020_RS11775 (ABN020_11765) - 2460285..2461442 (+) 1158 WP_349935563.1 trigger factor -
  ABN020_RS11780 (ABN020_11770) - 2461715..2462362 (-) 648 WP_349935564.1 hypothetical protein -
  ABN020_RS11785 (ABN020_11775) pgsA 2462442..2463056 (-) 615 WP_349137560.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABN020_RS11790 (ABN020_11780) rimO 2463075..2464400 (-) 1326 WP_097774406.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ABN020_RS11795 (ABN020_11785) - 2464439..2464948 (-) 510 WP_223388548.1 RecX family transcriptional regulator -
  ABN020_RS11800 (ABN020_11790) recA 2464949..2466130 (-) 1182 WP_005937946.1 recombinase RecA Machinery gene
  ABN020_RS11805 (ABN020_11795) - 2466248..2467222 (-) 975 WP_349935565.1 HemK/PrmC family methyltransferase -
  ABN020_RS11810 (ABN020_11800) - 2467216..2468163 (-) 948 WP_005937952.1 DUF1385 domain-containing protein -
  ABN020_RS11815 (ABN020_11805) - 2468226..2469650 (-) 1425 WP_120079784.1 HAMP domain-containing sensor histidine kinase -
  ABN020_RS11820 (ABN020_11810) - 2469647..2470354 (-) 708 WP_005937958.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41888.75 Da        Isoelectric Point: 5.5796

>NTDB_id=1009743 ABN020_RS11800 WP_005937946.1 2464949..2466130(-) (recA) [Faecalibacterium prausnitzii strain 6]
MAKNQNNNTVAPATKKTEPEAKKDALATALAQIEKQFGKGAVMKLGDNASMQVDAISTGSLGLDLALGVGGVPRGRIIEV
YGPESSGKTTLALHILAEAQKQGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVD
SVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRID
IRRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDIRLGQGRD
NAKQFLKDNPEIANDIEGQIRANADKLYASRRPAGKGAAAKAEEPAKAADAKEPVVKAPARSSESELDIMVED

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1009743 ABN020_RS11800 WP_005937946.1 2464949..2466130(-) (recA) [Faecalibacterium prausnitzii strain 6]
ATGGCAAAAAATCAGAACAACAACACCGTTGCCCCGGCGACCAAAAAGACCGAGCCGGAGGCCAAAAAGGATGCGCTGGC
CACTGCGCTGGCCCAGATCGAAAAGCAGTTCGGCAAGGGTGCCGTGATGAAGCTGGGTGATAACGCCTCCATGCAGGTGG
ATGCCATTTCCACCGGCAGTCTGGGTCTGGATCTGGCTCTGGGCGTGGGCGGTGTGCCCCGCGGCCGCATCATTGAGGTG
TACGGCCCGGAATCCAGCGGTAAGACCACGCTGGCTCTGCACATTCTGGCCGAAGCCCAGAAGCAGGGCGGCGAAGTGGC
CTTCATTGACGTGGAGCACGCACTGGACCCCACCTATGCCGAAGCGCTGGGCGTGGATATCAACAATCTGCTGGTCAGCC
AGCCGGACACCGGCGAGCAGGCCATGGAGATCTGCGAAGCACTGGTGCGCTCCGGTGCCATCGATGCCATCGTGGTGGAC
TCGGTTGCCGCTATGGTGCCGAGGGCTGAGATCGAGGGCGAAATGGGCGACAGCCATGTGGGCCTGCAGGCCCGCCTGAT
GAGTCAGGCCATGCGCAAGCTGACCTCGGTCATCGGCAAGACCAACACGGTCTGCGTCTTCATCAACCAGCTGCGTGAAA
AAGTGGGCGTGATGTACGGCAACCCGGAGGTCACCACCGGCGGCCGCGCCCTGAAATATTACGCCTCGGTGCGCATCGAC
ATCCGCCGCGTGGAGGGCCTGAAGGACTCTTCCGGCCAGTTCATCGGCAACCACACCCGCGCCAAGATCGTCAAGAACAA
GGTGGCCCCTCCGTTCCGTGAGGCAGAGTTCGATATCATGTTCGGCGAGGGCATTTCCAAGATGAGCGAACTCATTGATG
TGGGCGTGAAGCTGGGCATCGTGCAGAAGAGCGGCGCATGGTTCAACTATGGCGATATCCGTCTGGGTCAGGGCCGTGAC
AACGCAAAGCAGTTCCTGAAGGACAATCCCGAGATCGCAAACGACATCGAGGGCCAGATCCGCGCCAATGCCGATAAGCT
GTACGCATCCCGCCGCCCGGCAGGCAAGGGCGCTGCGGCCAAGGCCGAGGAACCCGCCAAGGCTGCAGATGCCAAGGAGC
CGGTGGTCAAGGCTCCTGCCCGCAGCAGCGAGAGCGAACTGGATATCATGGTGGAGGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

67.492

82.188

0.555
  recA Helicobacter pylori 26695

67.183

82.188

0.552
  recA Glaesserella parasuis strain SC1401

64.012

86.26

0.552
  recA Bacillus subtilis subsp. subtilis str. 168

67.081

81.934

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

81.679

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

84.987

0.532
  recA Streptococcus pyogenes NZ131

60.174

87.532

0.527
  recA Streptococcus mutans UA159

61.934

84.224

0.522
  recA Pseudomonas stutzeri DSM 10701

63.467

82.188

0.522
  recA Neisseria gonorrhoeae MS11

65.385

79.389

0.519
  recA Neisseria gonorrhoeae strain FA1090

65.385

79.389

0.519
  recA Neisseria gonorrhoeae MS11

65.385

79.389

0.519
  recA Vibrio cholerae strain A1552

63.354

81.934

0.519
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

81.934

0.519
  recA Streptococcus mitis NCTC 12261

61.92

82.188

0.509
  recA Lactococcus lactis subsp. cremoris KW2

60.241

84.478

0.509
  recA Latilactobacillus sakei subsp. sakei 23K

62.305

81.679

0.509
  recA Streptococcus mitis SK321

61.61

82.188

0.506
  recA Acinetobacter baylyi ADP1

62.187

81.425

0.506
  recA Ralstonia pseudosolanacearum GMI1000

63.666

79.135

0.504
  recA Acinetobacter baumannii D1279779

61.491

81.934

0.504
  recA Streptococcus pneumoniae D39

61.111

82.443

0.504
  recA Streptococcus pneumoniae Rx1

61.111

82.443

0.504
  recA Streptococcus pneumoniae R6

61.111

82.443

0.504
  recA Streptococcus pneumoniae TIGR4

61.111

82.443

0.504
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.433

87.023

0.491

Multiple sequence alignment