Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABJ384_RS06435 Genome accession   NZ_CP157981
Coordinates   1295247..1296290 (-) Length   347 a.a.
NCBI ID   WP_086196385.1    Uniprot ID   -
Organism   Acinetobacter sp. A1-4-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1290247..1301290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABJ384_RS06400 (ABJ384_06390) - 1290391..1290888 (+) 498 WP_086196390.1 OmpH family outer membrane protein -
  ABJ384_RS06405 (ABJ384_06395) lpxD 1290892..1291959 (+) 1068 WP_349929543.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  ABJ384_RS06410 (ABJ384_06400) fabZ 1291965..1292450 (+) 486 WP_171263214.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABJ384_RS06415 (ABJ384_06405) lpxA 1292447..1293235 (+) 789 WP_086196388.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  ABJ384_RS06420 (ABJ384_06410) - 1293288..1294148 (-) 861 WP_349929544.1 YbgF trimerization domain-containing protein -
  ABJ384_RS06430 (ABJ384_06420) - 1294579..1295175 (-) 597 WP_349929545.1 regulatory protein RecX -
  ABJ384_RS06435 (ABJ384_06425) recA 1295247..1296290 (-) 1044 WP_086196385.1 recombinase RecA Machinery gene
  ABJ384_RS06440 (ABJ384_06430) - 1296447..1296884 (-) 438 WP_349929546.1 S4 domain-containing protein -
  ABJ384_RS06445 (ABJ384_06435) - 1296877..1297563 (-) 687 WP_349929547.1 HAD-IA family hydrolase -
  ABJ384_RS06450 (ABJ384_06440) - 1297577..1298431 (+) 855 WP_349929548.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ABJ384_RS06455 (ABJ384_06445) - 1298490..1299233 (+) 744 WP_349929549.1 phosphoglycerate mutase family protein -
  ABJ384_RS06460 (ABJ384_06450) rpsT 1299414..1299680 (-) 267 WP_039622003.1 30S ribosomal protein S20 -
  ABJ384_RS06465 (ABJ384_06455) - 1299895..1300569 (+) 675 WP_349929550.1 NAD(P)H-binding protein -
  ABJ384_RS06470 (ABJ384_06460) rraA 1300573..1301085 (+) 513 WP_349929551.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37564.00 Da        Isoelectric Point: 4.9373

>NTDB_id=1009473 ABJ384_RS06435 WP_086196385.1 1295247..1296290(-) (recA) [Acinetobacter sp. A1-4-2]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
ECQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TRVKVVKNKMAPPFKEAVFQILYGKGVNHLGELIDLAVQQEIIQKAGAWYSYQGDKIGQGKNNVIRHLEENPQIAVEVEK
LIREQLLTTGTAPVEDKDEAEPDFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1009473 ABJ384_RS06435 WP_086196385.1 1295247..1296290(-) (recA) [Acinetobacter sp. A1-4-2]
ATGGATGATAATAAAAGCAAGGCGCTGAATGCTGCCCTAAGCCAGATTGAAAAACAGTTTGGTAAAAATACAGTAATGCG
CCTTGGTGACAATACTGTACAGGCCGTTGAAGCGGTCTCTACAGGCTCTTTAACCCTGGATATTGCTCTGGGTATTGGTG
GTTTACCTAAAGGCCGTATCGTTGAAATTTACGGCCCTGAATCTTCAGGTAAAACCACCATGACTTTGCAAGCTATTGCA
GAATGTCAAAAAGCGGGTGGTACATGTGCGTTCATTGATGCTGAACATGCACTTGATCCGCAATATGCCCGCAAGTTAGG
TGTAGACATTGACAATCTTCTGGTGTCACAACCGGACAATGGTGAACAGGCTCTTGAAATTGCCGACATGCTGGTACGCT
CTGGCGCCATTGACCTGATCGTGGTCGACTCCGTTGCAGCCCTAACCCCACGTGCGGAAATTGAAGGTGAAATGGGCGAC
TCTCACATGGGTCTGCAAGCCCGTTTGATGAGCCAGGCACTGCGTAAAATCACCGGTAATGCAAAACGTTCTAACTGTAT
GGTGATCTTCATTAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAGCCCTGAAACTACAACGGGTGGTAATGCGC
TTAAATTCTACGCTTCTGTACGTCTCGATATCCGCCGTATCGGTCAGGTAAAAGAAGGTGATGAAATCATCGGTTCGGAA
ACCCGCGTAAAAGTCGTGAAGAACAAGATGGCGCCTCCATTTAAAGAAGCAGTATTCCAGATTCTGTATGGTAAAGGTGT
CAACCATTTAGGTGAATTGATTGACCTCGCCGTACAGCAAGAGATCATCCAAAAAGCTGGCGCATGGTATTCTTATCAGG
GCGATAAAATTGGCCAAGGTAAAAACAACGTGATTCGCCATCTGGAAGAAAATCCACAAATTGCAGTGGAAGTGGAAAAA
CTGATTCGTGAACAGCTCCTCACTACAGGTACAGCACCAGTAGAAGATAAAGACGAAGCAGAACCAGACTTTTTAGATGC
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

90.544

100

0.911
  recA Acinetobacter baumannii D1279779

91.329

99.712

0.911
  recA Pseudomonas stutzeri DSM 10701

75.684

94.813

0.718
  recA Vibrio cholerae strain A1552

74.312

94.236

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.312

94.236

0.7
  recA Glaesserella parasuis strain SC1401

71.914

93.372

0.671
  recA Neisseria gonorrhoeae MS11

66.282

100

0.663
  recA Neisseria gonorrhoeae MS11

66.282

100

0.663
  recA Neisseria gonorrhoeae strain FA1090

66.282

100

0.663
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.524

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.865

98.559

0.62
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

95.389

0.617
  recA Helicobacter pylori strain NCTC11637

63.303

94.236

0.597
  recA Streptococcus mitis NCTC 12261

60.526

98.559

0.597
  recA Helicobacter pylori 26695

62.997

94.236

0.594
  recA Streptococcus mitis SK321

60.059

97.406

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.346

93.372

0.582
  recA Streptococcus mutans UA159

61.774

94.236

0.582
  recA Streptococcus pneumoniae D39

61.963

93.948

0.582
  recA Streptococcus pneumoniae Rx1

61.963

93.948

0.582
  recA Streptococcus pneumoniae R6

61.963

93.948

0.582
  recA Streptococcus pneumoniae TIGR4

61.963

93.948

0.582
  recA Streptococcus pyogenes NZ131

61.538

93.66

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

61.491

92.795

0.571
  recA Latilactobacillus sakei subsp. sakei 23K

60.436

92.507

0.559
  recA Lactococcus lactis subsp. cremoris KW2

58.824

93.084

0.548

Multiple sequence alignment