Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABNK63_RS10980 Genome accession   NZ_CP157948
Coordinates   2425244..2426281 (-) Length   345 a.a.
NCBI ID   WP_007806195.1    Uniprot ID   I4W447
Organism   Rhodanobacter sp. IGA1.0     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2420244..2431281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNK63_RS10965 (ABNK63_10950) csrA 2421280..2421483 (-) 204 WP_056716714.1 carbon storage regulator CsrA -
  ABNK63_RS10970 (ABNK63_10955) alaS 2421748..2424375 (-) 2628 WP_350015632.1 alanine--tRNA ligase -
  ABNK63_RS10975 (ABNK63_10960) - 2424460..2424969 (-) 510 WP_350015633.1 regulatory protein RecX -
  ABNK63_RS10980 (ABNK63_10965) recA 2425244..2426281 (-) 1038 WP_007806195.1 recombinase RecA Machinery gene
  ABNK63_RS10985 (ABNK63_10970) - 2426426..2426935 (-) 510 WP_082542815.1 CinA family protein -
  ABNK63_RS10990 (ABNK63_10975) mutS 2427023..2429647 (+) 2625 WP_350015634.1 DNA mismatch repair protein MutS -
  ABNK63_RS10995 (ABNK63_10980) - 2429771..2430955 (-) 1185 WP_007806200.1 PLP-dependent aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37023.37 Da        Isoelectric Point: 5.5689

>NTDB_id=1009316 ABNK63_RS10980 WP_007806195.1 2425244..2426281(-) (recA) [Rhodanobacter sp. IGA1.0]
MDDNKRKALTSALGQIEKQFGKGAVMRMGDRVNEAIETISTGSLGLDIALGVGGLPRGRVVEIYGPESSGKTTMTLQAIA
SCQRAGGTAAFIDAEHALDPTYAEKLGVKVDDLLVSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
SHVGLHARLMSQALRKLTANIKKSGCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKKGDEIIGSE
TRVKVVKNKVAPPFRQTEFEILYGEGTSREGEIIELGVAQNLIDKSGAWYSYNGDRIGQGKENVRQFLRDNPAIANEIDK
QLRERLLVPVGRPAAAAAEEALEEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1009316 ABNK63_RS10980 WP_007806195.1 2425244..2426281(-) (recA) [Rhodanobacter sp. IGA1.0]
ATGGATGACAACAAGCGCAAGGCGCTCACCTCCGCCCTCGGCCAGATCGAAAAGCAGTTCGGCAAGGGTGCCGTCATGCG
CATGGGCGATCGCGTCAACGAAGCGATCGAGACGATCTCCACCGGCTCGCTGGGACTGGACATCGCGCTGGGCGTCGGCG
GCCTGCCGCGCGGTCGCGTGGTCGAGATCTACGGCCCGGAATCCTCCGGCAAGACCACCATGACCCTGCAGGCGATCGCC
AGCTGCCAACGCGCCGGCGGCACCGCCGCATTCATCGACGCCGAGCACGCGCTCGACCCGACCTATGCCGAGAAGCTGGG
CGTCAAGGTCGACGACCTGCTGGTGTCGCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGCT
CCGGCGCGGTGGACATGGTGGTGGTCGACTCGGTGGCCGCGCTGACCCCGAAGGCGGAAATCGAGGGCGAGATGGGCGAC
TCCCACGTCGGCCTGCACGCCCGTCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGAAGTCCGGCTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGTGGCAACGCGC
TGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGGTGAAGAAGGGCGACGAGATCATCGGTTCGGAA
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCCGCCAGACCGAGTTCGAGATCCTGTACGGCGAGGGCAC
CTCGCGCGAGGGCGAGATCATCGAGCTGGGCGTGGCGCAGAACCTGATCGACAAGTCCGGCGCCTGGTACAGCTACAACG
GCGACCGCATCGGCCAGGGCAAGGAGAACGTGCGCCAGTTCCTGCGCGACAACCCGGCGATCGCCAACGAGATCGACAAG
CAGCTGCGCGAACGCCTGCTGGTGCCGGTCGGCCGGCCGGCGGCCGCCGCCGCTGAAGAGGCGCTCGAGGAAGCGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I4W447

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

75.072

100

0.751
  recA Ralstonia pseudosolanacearum GMI1000

71.469

100

0.733
  recA Acinetobacter baylyi ADP1

74.631

98.261

0.733
  recA Acinetobacter baumannii D1279779

74.618

94.783

0.707
  recA Neisseria gonorrhoeae MS11

74.074

93.913

0.696
  recA Neisseria gonorrhoeae MS11

74.074

93.913

0.696
  recA Neisseria gonorrhoeae strain FA1090

74.074

93.913

0.696
  recA Vibrio cholerae strain A1552

72.34

95.362

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.34

95.362

0.69
  recA Glaesserella parasuis strain SC1401

70.37

93.913

0.661
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

95.942

0.623
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.749

94.783

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

65.217

93.333

0.609
  recA Helicobacter pylori strain NCTC11637

63.303

94.783

0.6
  recA Helicobacter pylori 26695

62.997

94.783

0.597
  recA Streptococcus mutans UA159

62.462

94.203

0.588
  recA Streptococcus pyogenes NZ131

61.585

95.072

0.586
  recA Streptococcus mitis SK321

59.701

97.101

0.58
  recA Latilactobacillus sakei subsp. sakei 23K

61.994

93.043

0.577
  recA Streptococcus pneumoniae Rx1

60.736

94.493

0.574
  recA Streptococcus pneumoniae D39

60.736

94.493

0.574
  recA Streptococcus pneumoniae R6

60.736

94.493

0.574
  recA Streptococcus pneumoniae TIGR4

60.736

94.493

0.574
  recA Streptococcus mitis NCTC 12261

61.3

93.623

0.574
  recA Lactococcus lactis subsp. cremoris KW2

58.514

93.623

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.798

94.783

0.548

Multiple sequence alignment