Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABNP39_RS04400 Genome accession   NZ_CP157882
Coordinates   996158..997228 (+) Length   356 a.a.
NCBI ID   WP_058771490.1    Uniprot ID   -
Organism   Pantoea dispersa strain XJ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 991158..1002228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNP39_RS04380 (ABNP39_04375) mltB 992972..994054 (+) 1083 WP_349844247.1 lytic murein transglycosylase B -
  ABNP39_RS04385 (ABNP39_04380) - 994141..994476 (+) 336 WP_021507336.1 zinc ribbon domain-containing protein YjdM -
  ABNP39_RS04390 (ABNP39_04385) tam 994691..995467 (+) 777 WP_349844248.1 trans-aconitate 2-methyltransferase -
  ABNP39_RS04395 (ABNP39_04390) pncC 995570..996064 (+) 495 WP_010616727.1 nicotinamide-nucleotide amidase -
  ABNP39_RS04400 (ABNP39_04395) recA 996158..997228 (+) 1071 WP_058771490.1 recombinase RecA Machinery gene
  ABNP39_RS04405 (ABNP39_04400) - 997336..997851 (+) 516 WP_223815705.1 regulatory protein RecX -
  ABNP39_RS04410 (ABNP39_04405) alaS 997987..1000614 (+) 2628 WP_141496288.1 alanine--tRNA ligase -
  ABNP39_RS04415 (ABNP39_04410) csrA 1000864..1001049 (+) 186 WP_058759760.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37978.38 Da        Isoelectric Point: 4.8683

>NTDB_id=1008865 ABNP39_RS04400 WP_058771490.1 996158..997228(+) (recA) [Pantoea dispersa strain XJ2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINTFGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANATNFLKENPAIANEL
DVKLRDMLLTGATADAATADSAADKYEEASETNEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1008865 ABNP39_RS04400 WP_058771490.1 996158..997228(+) (recA) [Pantoea dispersa strain XJ2]
ATGGCGATTGACGAGAACAAACAGAAGGCTTTAGCTGCCGCGCTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCGATGGATGTTGAAACCATCTCTACCGGCTCCCTGTCGCTGGACATCGCGCTGGGCG
CGGGTGGCCTGCCAATGGGCCGTATCGTTGAGATTTACGGACCTGAGTCATCCGGTAAAACCACGCTGACCCTGCAGGTC
ATTGCTGCTGCGCAGCGTAAAGGCAAAACCTGTGCCTTTATCGATGCCGAGCACGCGCTGGATCCGGTATACGCCAAGAA
ACTGGGCGTCGACATTGATAACCTGCTGTGTTCGCAGCCGGATACCGGTGAGCAGGCGCTGGAGATCTGTGATGCGCTGG
CCCGTTCGGGTGCGGTAGACGTGATCATCGTTGACTCCGTGGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGTGATTCGCACATGGGTCTGGCTGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTCAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCCCTGAAGTTCTACGCCTCCGTGCGTCTGGATATCCGCCGTATCGGCGCCATTAAAGAGGGCGACGAAGTGGTGGGG
AGCGAAACCCGCGTTAAAGTGGTGAAGAACAAAGTGGCAGCACCGTTTAAGCAGGCTGAGTTCCAGATCATGTACGGTGA
AGGCATCAACACCTTCGGCGAGCTGGTTGACCTCGGCGTGAAGCACAAACTGGTGGAAAAAGCCGGTGCGTGGTACAGCT
ACAACGGCGATAAAATCGGCCAGGGTAAAGCGAACGCCACCAACTTCCTCAAAGAGAACCCGGCGATTGCCAATGAGCTC
GACGTTAAGCTGCGTGACATGCTGCTGACCGGTGCAACGGCAGATGCGGCGACAGCGGATAGCGCGGCTGATAAATACGA
AGAAGCCAGCGAAACCAACGAAGATTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.104

97.191

0.817
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.104

97.191

0.817
  recA Pseudomonas stutzeri DSM 10701

74.405

94.382

0.702
  recA Acinetobacter baumannii D1279779

73.054

93.82

0.685
  recA Acinetobacter baylyi ADP1

71.137

96.348

0.685
  recA Glaesserella parasuis strain SC1401

68.857

98.315

0.677
  recA Neisseria gonorrhoeae MS11

67.257

95.225

0.64
  recA Neisseria gonorrhoeae MS11

67.257

95.225

0.64
  recA Neisseria gonorrhoeae strain FA1090

67.257

95.225

0.64
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.36

0.618
  recA Streptococcus mitis SK321

58.873

99.719

0.587
  recA Streptococcus mitis NCTC 12261

58.924

99.157

0.584
  recA Streptococcus pneumoniae TIGR4

58.592

99.719

0.584
  recA Streptococcus pneumoniae Rx1

58.592

99.719

0.584
  recA Streptococcus pneumoniae D39

58.592

99.719

0.584
  recA Streptococcus pneumoniae R6

58.592

99.719

0.584
  recA Helicobacter pylori strain NCTC11637

62.997

91.854

0.579
  recA Helicobacter pylori 26695

62.691

91.854

0.576
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.95

89.607

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.169

0.57
  recA Streptococcus mutans UA159

62.154

91.292

0.567
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.92

90.73

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.258

0.559
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.292

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.202

91.573

0.542

Multiple sequence alignment