Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABNF92_RS04340 Genome accession   NZ_CP157802
Coordinates   946403..947449 (-) Length   348 a.a.
NCBI ID   WP_069183871.1    Uniprot ID   A0AAU7MPD1
Organism   Marinobacter sp. MMG032     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 941403..952449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNF92_RS04315 (ABNF92_04315) fixJ 941762..942388 (-) 627 WP_069183866.1 response regulator FixJ -
  ABNF92_RS04320 (ABNF92_04320) - 942428..944836 (-) 2409 WP_349343541.1 ATP-binding protein -
  ABNF92_RS04325 (ABNF92_04325) - 945054..945431 (+) 378 WP_069183868.1 PilZ domain-containing protein -
  ABNF92_RS04330 (ABNF92_04330) - 945445..945915 (-) 471 WP_222466420.1 flavodoxin family protein -
  ABNF92_RS04335 (ABNF92_04335) - 946149..946406 (+) 258 WP_336119294.1 hypothetical protein -
  ABNF92_RS04340 (ABNF92_04340) recA 946403..947449 (-) 1047 WP_069183871.1 recombinase RecA Machinery gene
  ABNF92_RS04345 (ABNF92_04345) pncC 947614..948114 (-) 501 WP_349343542.1 nicotinamide-nucleotide amidase -
  ABNF92_RS04350 (ABNF92_04350) - 948595..948813 (+) 219 Protein_846 integrase -
  ABNF92_RS04355 (ABNF92_04355) - 949322..949798 (+) 477 WP_349343543.1 metal-dependent hydrolase -
  ABNF92_RS04360 (ABNF92_04360) - 949896..951428 (+) 1533 WP_349343544.1 hypothetical protein -
  ABNF92_RS04365 (ABNF92_04365) - 951593..952333 (-) 741 WP_349343545.1 HNH endonuclease family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37463.05 Da        Isoelectric Point: 5.3316

>NTDB_id=1008359 ABNF92_RS04340 WP_069183871.1 946403..947449(-) (recA) [Marinobacter sp. MMG032]
MEDNRKKALSAALGQIERQFGKGAVMKMGDQPREAIPAVSTGSLGLDVALGIGGLPYGRICEIYGPESSGKTTLTLQVIA
EAQKAGKTCAFVDAEHALDPVYAEKLGVNVDDLLVSQPDTGEQALEIADMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTGNVKHANCLMIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVSPPFKQAEFQIMYGKGIYHMAEVLDMGVKEGFVDKSGAWYAYNGDKIGQGKANACKFLEENMDIANEIEA
KVRDKLMPKPVSKKDAEEAPAEANGELL

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1008359 ABNF92_RS04340 WP_069183871.1 946403..947449(-) (recA) [Marinobacter sp. MMG032]
ATGGAAGACAACCGCAAGAAAGCATTGAGCGCAGCACTTGGGCAGATTGAGCGCCAGTTCGGCAAGGGCGCCGTGATGAA
AATGGGTGACCAGCCCCGCGAAGCCATTCCTGCGGTCTCCACCGGTTCTCTGGGCCTGGACGTTGCCCTGGGTATTGGCG
GTCTGCCTTACGGTCGAATCTGTGAAATCTACGGCCCTGAGAGTTCCGGTAAAACCACGCTTACCCTGCAGGTGATTGCC
GAGGCACAGAAGGCGGGTAAAACCTGTGCGTTTGTCGACGCCGAACACGCCCTCGACCCGGTCTACGCCGAGAAGCTGGG
CGTGAATGTGGACGATCTTCTGGTGTCCCAGCCGGATACCGGTGAGCAGGCCCTGGAAATCGCCGACATGCTGGTGCGTT
CCAATGCGGTTGACGTGATCATCGTTGACTCGGTCGCCGCCCTGACGCCAAAAGCGGAAATTGAGGGCGAGATGGGCGAC
AGCCACGTTGGCCTGCAGGCGCGACTGATGTCCCAGGCGCTGCGGAAACTGACGGGTAACGTCAAGCATGCCAACTGCCT
GATGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAATTCTATTCCTCTGTGCGCCTGGATATCCGCCGTATCGGTTCCGTTAAAGACGGCGACGAGGTGGTGGGTAACGAG
ACCCGCGTGAAAGTGGTCAAGAACAAGGTGTCCCCGCCGTTCAAACAGGCCGAGTTCCAGATCATGTACGGCAAGGGCAT
TTACCACATGGCGGAAGTCCTGGATATGGGGGTCAAGGAAGGCTTTGTGGATAAATCCGGCGCCTGGTACGCCTACAACG
GCGACAAGATCGGCCAGGGCAAGGCGAATGCCTGCAAGTTCCTGGAGGAAAACATGGACATTGCTAACGAGATTGAAGCC
AAGGTTCGTGACAAGCTGATGCCCAAGCCGGTCTCGAAGAAAGACGCTGAAGAGGCGCCCGCAGAAGCGAACGGCGAGCT
TCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.24

95.977

0.77
  recA Acinetobacter baylyi ADP1

70.76

98.276

0.695
  recA Ralstonia pseudosolanacearum GMI1000

70.588

97.701

0.69
  recA Acinetobacter baumannii D1279779

72.783

93.966

0.684
  recA Vibrio cholerae strain A1552

72.783

93.966

0.684
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.783

93.966

0.684
  recA Glaesserella parasuis strain SC1401

71.818

94.828

0.681
  recA Neisseria gonorrhoeae MS11

71.296

93.103

0.664
  recA Neisseria gonorrhoeae MS11

71.296

93.103

0.664
  recA Neisseria gonorrhoeae strain FA1090

71.296

93.103

0.664
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.862

95.69

0.592
  recA Helicobacter pylori strain NCTC11637

60.831

96.839

0.589
  recA Helicobacter pylori 26695

60.831

96.839

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

92.241

0.583
  recA Streptococcus pneumoniae Rx1

55.874

100

0.56
  recA Streptococcus pneumoniae D39

55.874

100

0.56
  recA Streptococcus pneumoniae R6

55.874

100

0.56
  recA Streptococcus pneumoniae TIGR4

55.874

100

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

60.559

92.529

0.56
  recA Streptococcus mutans UA159

59.077

93.391

0.552
  recA Lactococcus lactis subsp. cremoris KW2

58.462

93.391

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.333

93.103

0.543
  recA Streptococcus pyogenes NZ131

57.317

94.253

0.54
  recA Streptococcus mitis NCTC 12261

57.895

92.816

0.537
  recA Streptococcus mitis SK321

57.585

92.816

0.534

Multiple sequence alignment