Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABL839_RS29180 Genome accession   NZ_CP157634
Coordinates   6215524..6216627 (-) Length   367 a.a.
NCBI ID   WP_019653815.1    Uniprot ID   -
Organism   Variovorax paradoxus strain 110B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6210524..6221627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL839_RS29150 (ABL839_29175) sucC 6210942..6212108 (-) 1167 WP_019653821.1 ADP-forming succinate--CoA ligase subunit beta -
  ABL839_RS29155 (ABL839_29180) argC 6212327..6213250 (+) 924 WP_019653820.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  ABL839_RS29160 (ABL839_29185) - 6213303..6214046 (-) 744 WP_019653819.1 hypothetical protein -
  ABL839_RS29165 (ABL839_29190) yiaA 6214137..6214574 (+) 438 WP_019653818.1 inner membrane protein YiaA -
  ABL839_RS29170 (ABL839_29195) - 6214601..6215032 (-) 432 WP_019653817.1 hypothetical protein -
  ABL839_RS29175 (ABL839_29200) recX 6215013..6215474 (-) 462 WP_019653816.1 recombination regulator RecX -
  ABL839_RS29180 (ABL839_29205) recA 6215524..6216627 (-) 1104 WP_019653815.1 recombinase RecA Machinery gene
  ABL839_RS29185 (ABL839_29210) - 6216774..6217259 (+) 486 WP_019653814.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABL839_RS29190 (ABL839_29215) - 6217332..6218006 (+) 675 WP_019653813.1 response regulator transcription factor -
  ABL839_RS29195 (ABL839_29220) - 6218122..6219564 (+) 1443 WP_019653812.1 sensor histidine kinase -
  ABL839_RS29200 (ABL839_29225) - 6219583..6219783 (-) 201 WP_019653811.1 hypothetical protein -
  ABL839_RS29205 (ABL839_29230) - 6219801..6220616 (-) 816 WP_019653810.1 biotin--[acetyl-CoA-carboxylase] ligase -
  ABL839_RS29210 (ABL839_29235) - 6220622..6221329 (-) 708 WP_019653809.1 SET domain-containing protein-lysine N-methyltransferase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39128.88 Da        Isoelectric Point: 5.2156

>NTDB_id=1007901 ABL839_RS29180 WP_019653815.1 6215524..6216627(-) (recA) [Variovorax paradoxus strain 110B]
MDAVVKGSSIGANSEKAKALQAALAQIEKQFGKGTIMRLGEGEVLEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPES
SGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAAL
TPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
TIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKIIDKSGAWYAYNGEKIGQGRDNAREFL
RENPSLSREIENKVRESLGVPLLAADAEDAPEKPQKASKADKADKGE

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=1007901 ABL839_RS29180 WP_019653815.1 6215524..6216627(-) (recA) [Variovorax paradoxus strain 110B]
ATGGACGCAGTAGTCAAGGGTTCGAGCATCGGCGCCAACAGCGAGAAGGCCAAGGCCCTGCAGGCCGCGCTGGCCCAGAT
CGAAAAGCAGTTCGGCAAGGGCACCATCATGCGGCTCGGCGAGGGCGAGGTGCTGGAGGACATCCAGGTCGTCTCCACCG
GCTCCCTGGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAGATCTACGGCCCTGAATCC
TCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGCCGA
ACACGCCCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTCAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCGGCG
AGCAGGCCCTCGAGATCGTCGACTCGCTGGTGCGCTCGGGCGCTGTGGACCTGATCGTGGTCGACTCGGTCGCCGCGCTC
ACGCCCAAGGCCGAAATCGAAGGCGAGATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCG
CAAGCTCACCGCCACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGT
TCGGCTCGCCCGAGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGC
ACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTGAAGGTGGTGAAGAACAAGGTCTCGCCTCCGTTCAA
GACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAACGCCAAGA
TCATCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTCCTG
CGCGAGAACCCCTCGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCGTGCCGCTGCTGGCCGCCGATGC
CGAGGACGCGCCCGAGAAGCCGCAGAAGGCTTCCAAGGCCGACAAGGCGGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.759

86.921

0.719
  recA Neisseria gonorrhoeae MS11

68.876

94.55

0.651
  recA Neisseria gonorrhoeae strain FA1090

68.876

94.55

0.651
  recA Neisseria gonorrhoeae MS11

68.876

94.55

0.651
  recA Glaesserella parasuis strain SC1401

67.139

96.185

0.646
  recA Acinetobacter baylyi ADP1

72.086

88.828

0.64
  recA Pseudomonas stutzeri DSM 10701

72.086

88.828

0.64
  recA Acinetobacter baumannii D1279779

71.472

88.828

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.301

89.646

0.621
  recA Vibrio cholerae strain A1552

69.301

89.646

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.272

92.098

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.294

92.643

0.605
  recA Helicobacter pylori 26695

65.549

89.373

0.586
  recA Helicobacter pylori strain NCTC11637

65.549

89.373

0.586
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

89.101

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

61.404

93.188

0.572
  recA Streptococcus mutans UA159

58.873

96.73

0.569
  recA Streptococcus pneumoniae TIGR4

58.689

95.64

0.561
  recA Streptococcus pneumoniae Rx1

58.689

95.64

0.561
  recA Streptococcus pneumoniae D39

58.689

95.64

0.561
  recA Streptococcus pneumoniae R6

58.689

95.64

0.561
  recA Streptococcus mitis SK321

59.767

93.46

0.559
  recA Streptococcus pyogenes NZ131

62.006

89.646

0.556
  recA Lactococcus lactis subsp. cremoris KW2

61.329

90.191

0.553
  recA Streptococcus mitis NCTC 12261

60.725

90.191

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

87.466

0.537

Multiple sequence alignment