Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABL837_RS25685 Genome accession   NZ_CP157626
Coordinates   5414659..5415777 (-) Length   372 a.a.
NCBI ID   WP_062363963.1    Uniprot ID   -
Organism   Variovorax paradoxus NBRC 15149     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5409659..5420777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL837_RS25660 (ABL837_25620) - 5410141..5410827 (-) 687 WP_015867929.1 TerC family protein -
  ABL837_RS25665 (ABL837_25625) sucD 5410930..5411823 (-) 894 WP_015867930.1 succinate--CoA ligase subunit alpha -
  ABL837_RS25670 (ABL837_25630) sucC 5411834..5413000 (-) 1167 WP_015867931.1 ADP-forming succinate--CoA ligase subunit beta -
  ABL837_RS25675 (ABL837_25635) argC 5413207..5414130 (+) 924 WP_015867932.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  ABL837_RS25680 (ABL837_25640) recX 5414179..5414631 (-) 453 WP_062363965.1 recombination regulator RecX -
  ABL837_RS25685 (ABL837_25645) recA 5414659..5415777 (-) 1119 WP_062363963.1 recombinase RecA Machinery gene
  ABL837_RS25690 (ABL837_25650) - 5415923..5416408 (+) 486 WP_018903493.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABL837_RS25695 (ABL837_25655) - 5416474..5417145 (+) 672 WP_015867936.1 response regulator -
  ABL837_RS25700 (ABL837_25660) - 5417191..5418636 (+) 1446 WP_015867937.1 sensor histidine kinase -
  ABL837_RS25705 (ABL837_25665) - 5418658..5418846 (-) 189 WP_015867938.1 hypothetical protein -
  ABL837_RS25710 (ABL837_25670) - 5418858..5419685 (-) 828 WP_018903492.1 biotin--[acetyl-CoA-carboxylase] ligase -
  ABL837_RS25715 (ABL837_25675) - 5419688..5420320 (-) 633 WP_062363961.1 SET domain-containing protein -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39619.52 Da        Isoelectric Point: 5.3952

>NTDB_id=1007828 ABL837_RS25685 WP_062363963.1 5414659..5415777(-) (recA) [Variovorax paradoxus NBRC 15149]
MDALVKGTSISVAGSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDVQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAQMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNAKILDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADANAPAPEKAEKPAKAPKADKADKGE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=1007828 ABL837_RS25685 WP_062363963.1 5414659..5415777(-) (recA) [Variovorax paradoxus NBRC 15149]
ATGGACGCACTCGTCAAGGGCACCAGCATCTCGGTCGCAGGCAGCGAAAAAGCCAAGGCCCTGCAGGCCGCACTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAGGGCGAGGCACTCGAAGACGTCCAGGTGGTCTCCA
CCGGCTCGCTCGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCCAGATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
CGAACACGCGCTCGACGTGCAGTACGCCCAGAAGCTCGGCGTGAACCTGTCCGACCTGCTCATCAGCCAGCCCGACACCG
GCGAGCAGGCCCTCGAAATCGTCGATTCGCTGGTGCGCTCGGGCGCCGTCGACCTGATCGTGGTCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGGCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCTCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGCGTGAACGCCA
AGATCCTCGACAAGTCGGGTGCCTGGTACGCCTACAACGGCGAAAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGAACTCTCGCGCGAGATCGAGAACAAGGTGCGCGAATCGCTGGGCATTCCCCTGCTGGCGGCCGA
TGCCAACGCTCCCGCCCCCGAAAAGGCCGAGAAGCCGGCGAAGGCGCCCAAGGCCGACAAAGCCGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.759

85.753

0.71
  recA Acinetobacter baylyi ADP1

70.554

92.204

0.651
  recA Pseudomonas stutzeri DSM 10701

69.942

93.011

0.651
  recA Neisseria gonorrhoeae MS11

71.951

88.172

0.634
  recA Neisseria gonorrhoeae MS11

71.951

88.172

0.634
  recA Neisseria gonorrhoeae strain FA1090

71.951

88.172

0.634
  recA Acinetobacter baumannii D1279779

72.446

86.828

0.629
  recA Glaesserella parasuis strain SC1401

71.605

87.097

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.552

87.634

0.618
  recA Vibrio cholerae strain A1552

70.552

87.634

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.098

87.634

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.985

90.591

0.589
  recA Streptococcus mutans UA159

59.497

96.237

0.573
  recA Helicobacter pylori strain NCTC11637

65.337

87.634

0.573
  recA Helicobacter pylori 26695

65.337

87.634

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

87.903

0.567
  recA Streptococcus pneumoniae Rx1

58.774

96.505

0.567
  recA Streptococcus pneumoniae TIGR4

58.774

96.505

0.567
  recA Streptococcus pneumoniae R6

58.774

96.505

0.567
  recA Streptococcus pneumoniae D39

58.774

96.505

0.567
  recA Streptococcus pyogenes NZ131

62.538

88.978

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

88.71

0.556
  recA Streptococcus mitis SK321

61.747

89.247

0.551
  recA Streptococcus mitis NCTC 12261

61.747

89.247

0.551
  recA Lactococcus lactis subsp. cremoris KW2

61.446

89.247

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.994

86.29

0.535

Multiple sequence alignment