Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABL847_RS17620 Genome accession   NZ_CP157616
Coordinates   3849504..3850577 (-) Length   357 a.a.
NCBI ID   WP_076999906.1    Uniprot ID   -
Organism   Variovorax sp. KK3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3844504..3855577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL847_RS17595 (ABL847_17570) - 3845014..3845697 (-) 684 WP_076999901.1 TerC family protein -
  ABL847_RS17600 (ABL847_17575) sucD 3845787..3846680 (-) 894 WP_076999902.1 succinate--CoA ligase subunit alpha -
  ABL847_RS17605 (ABL847_17580) sucC 3846692..3847855 (-) 1164 WP_076999903.1 ADP-forming succinate--CoA ligase subunit beta -
  ABL847_RS17610 (ABL847_17585) argC 3848049..3848972 (+) 924 WP_076999904.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  ABL847_RS17615 (ABL847_17590) recX 3849039..3849491 (-) 453 WP_076999905.1 recombination regulator RecX -
  ABL847_RS17620 (ABL847_17595) recA 3849504..3850577 (-) 1074 WP_076999906.1 recombinase RecA Machinery gene
  ABL847_RS17625 (ABL847_17600) - 3850725..3851210 (+) 486 WP_076999907.1 MarR family winged helix-turn-helix transcriptional regulator -
  ABL847_RS17630 (ABL847_17605) - 3851271..3851942 (+) 672 WP_076999908.1 response regulator transcription factor -
  ABL847_RS17635 (ABL847_17610) - 3851971..3853422 (+) 1452 WP_076999909.1 sensor histidine kinase -
  ABL847_RS17640 (ABL847_17615) - 3853447..3853638 (-) 192 WP_076999910.1 sporulation protein -
  ABL847_RS17645 (ABL847_17620) - 3853644..3854438 (-) 795 WP_076999911.1 biotin--[acetyl-CoA-carboxylase] ligase -
  ABL847_RS17650 (ABL847_17625) - 3854441..3854998 (-) 558 WP_076999912.1 SET domain-containing protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 37978.67 Da        Isoelectric Point: 5.0626

>NTDB_id=1007725 ABL847_RS17620 WP_076999906.1 3849504..3850577(-) (recA) [Variovorax sp. KK3]
MDAVVKGSSIAGANTEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAEMQRQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTVKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENVALAHEIENKVRESLGIPLLPEVGEAGEAPAGK

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=1007725 ABL847_RS17620 WP_076999906.1 3849504..3850577(-) (recA) [Variovorax sp. KK3]
ATGGACGCAGTCGTCAAGGGCTCGAGCATCGCCGGCGCCAACACCGAAAAGGCCAAGGCCCTGCAAGCCGCCCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTGGGCGAAGGCGAAGCACTGGAGGACATCCAGGTCGTCTCCA
CCGGCTCGCTGGGGCTGGACATCGCCTTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAAATCTACGGGCCGGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGAGATGCAGCGCCAGGCCGGCACCTGCGCCTTCGTCGATGC
CGAGCACGCGCTCGACGTGCAGTACGCGCAGAAGCTGGGCGTCAACCTTTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAGCAGGCGCTCGAAATCGTCGATTCGCTGGTGCGCTCGGGCGCGGTCGACCTGATCGTGGTCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCGATCGGCAACGAGACCAAGGTCAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTT
CAAGACGGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGACCGTCA
AGATCGTCGACAAGTCGGGCGCCTGGTATGCCTACAACGGCGAGAAGATCGGACAGGGCCGCGACAACGCGCGCGAGTTC
CTGCGTGAGAACGTGGCGCTGGCCCATGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATCCCGCTGCTGCCCGAGGT
GGGCGAAGCAGGCGAGGCGCCTGCCGGCAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.493

93.838

0.765
  recA Pseudomonas stutzeri DSM 10701

72.086

91.317

0.658
  recA Acinetobacter baumannii D1279779

72.136

90.476

0.653
  recA Acinetobacter baylyi ADP1

71.827

90.476

0.65
  recA Neisseria gonorrhoeae MS11

70.427

91.877

0.647
  recA Neisseria gonorrhoeae MS11

70.427

91.877

0.647
  recA Neisseria gonorrhoeae strain FA1090

70.427

91.877

0.647
  recA Glaesserella parasuis strain SC1401

70.988

90.756

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.552

91.317

0.644
  recA Vibrio cholerae strain A1552

70.552

91.317

0.644
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.781

92.157

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.163

92.717

0.613
  recA Helicobacter pylori 26695

66.159

91.877

0.608
  recA Helicobacter pylori strain NCTC11637

66.159

91.877

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

91.597

0.597
  recA Latilactobacillus sakei subsp. sakei 23K

62.275

93.557

0.583
  recA Streptococcus pneumoniae Rx1

60.059

94.678

0.569
  recA Streptococcus pneumoniae D39

60.059

94.678

0.569
  recA Streptococcus pneumoniae R6

60.059

94.678

0.569
  recA Streptococcus pneumoniae TIGR4

60.059

94.678

0.569
  recA Streptococcus pyogenes NZ131

61.398

92.157

0.566
  recA Streptococcus mitis NCTC 12261

59.292

94.958

0.563
  recA Lactococcus lactis subsp. cremoris KW2

60.909

92.437

0.563
  recA Streptococcus mutans UA159

60.909

92.437

0.563
  recA Streptococcus mitis SK321

60.303

92.437

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

89.916

0.543

Multiple sequence alignment