Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABLB98_RS08400 Genome accession   NZ_CP157435
Coordinates   1743960..1745006 (+) Length   348 a.a.
NCBI ID   WP_004661473.1    Uniprot ID   N9LTX4
Organism   Acinetobacter sp. XH1639     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1738960..1750006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLB98_RS08365 (ABLB98_08360) rraA 1739237..1739749 (-) 513 WP_256414894.1 ribonuclease E activity regulator RraA -
  ABLB98_RS08370 (ABLB98_08365) - 1739763..1740428 (-) 666 WP_348882427.1 NAD(P)H-binding protein -
  ABLB98_RS08375 (ABLB98_08370) rpsT 1740641..1740907 (+) 267 WP_004639414.1 30S ribosomal protein S20 -
  ABLB98_RS08380 (ABLB98_08375) - 1741028..1741759 (-) 732 WP_256414907.1 histidine phosphatase family protein -
  ABLB98_RS08385 (ABLB98_08380) - 1741816..1742673 (-) 858 WP_348882428.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ABLB98_RS08390 (ABLB98_08385) - 1742685..1743389 (+) 705 WP_348882429.1 HAD-IA family hydrolase -
  ABLB98_RS08395 (ABLB98_08390) - 1743373..1743801 (+) 429 WP_005215468.1 RNA-binding S4 domain-containing protein -
  ABLB98_RS08400 (ABLB98_08395) recA 1743960..1745006 (+) 1047 WP_004661473.1 recombinase RecA Machinery gene
  ABLB98_RS08405 (ABLB98_08400) - 1745053..1745535 (+) 483 WP_348882430.1 regulatory protein RecX -
  ABLB98_RS08415 (ABLB98_08410) - 1745962..1746822 (+) 861 WP_348882431.1 YbgF trimerization domain-containing protein -
  ABLB98_RS08420 (ABLB98_08415) - 1746891..1748762 (-) 1872 WP_348882432.1 SurA N-terminal domain-containing protein -
  ABLB98_RS08425 (ABLB98_08420) - 1748891..1749163 (-) 273 WP_004661469.1 HU family DNA-binding protein -
  ABLB98_RS08430 (ABLB98_08425) - 1749329..1749784 (-) 456 WP_087547144.1 phasin family protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37940.28 Da        Isoelectric Point: 5.0470

>NTDB_id=1006843 ABLB98_RS08400 WP_004661473.1 1743960..1745006(+) (recA) [Acinetobacter sp. XH1639]
MDDNKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKNGGTCAFIDAEHALDPEYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEITGNE
TRVKVVKNKMAPPFKEAVFQIMYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPAMAQEIEK
VIREQLLTKNNKEAAQTEDEEEPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=1006843 ABLB98_RS08400 WP_004661473.1 1743960..1745006(+) (recA) [Acinetobacter sp. XH1639]
ATGGATGATAATAAAAGCAAGGCGTTACAAGCAGCCTTAAGCCAAATTGAAAAGCAATTTGGTAAAAATACCGTGATGCG
CTTAGGTGATAATACTGTACAAGCTGTTGAAGCGGTTTCTACAGGTTCTTTAACTCTCGATATCGCGTTAGGGATTGGCG
GATTACCTAAAGGTCGTATTATCGAAATTTATGGTCCTGAATCTTCAGGTAAAACTACCATGACATTACAAGCGATTGCT
CAATGTCAAAAAAATGGCGGTACCTGTGCCTTTATCGATGCAGAACATGCATTAGATCCAGAATATGCACGTAAACTTGG
CGTAGATATTGATAATCTATTGGTTTCACAACCTGACCACGGTGAGCAAGCGCTCGAAATCGCCGATATGTTAGTGCGTT
CGGGTGCAATCGATTTAATCGTTGTCGACTCTGTAGCAGCATTAACCCCTAAAGCCGAAATTGAAGGCGAAATGGGTGAC
TCGCACATGGGCTTACAAGCACGCTTAATGAGTCAGGCTCTGCGTAAAATTACAGGTAATGCGAAACGCTCGAACTGTAT
GGTGATCTTCATTAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAGCCCAGAAACCACTACAGGTGGTAATGCAC
TTAAATTCTACGCTTCTGTACGATTAGATATCCGTCGTATTGGTCAAGTGAAAGAAGGTGACGAGATCACAGGTAACGAA
ACGCGTGTTAAAGTTGTGAAAAACAAAATGGCACCTCCGTTCAAAGAAGCTGTGTTCCAAATCATGTATGGCAAAGGCAC
TAATCAGTTAGGCGAATTGGTTGATCTTGCTGTTCAACAAGACATCGTACAAAAAGCGGGTGCTTGGTATTCTTATCAAG
GCAATAAAATTGGTCAAGGTAAAAATAACGTGATTCGACATTTTGAGGAAAATCCAGCAATGGCTCAAGAAATCGAAAAG
GTCATTCGTGAACAACTTCTTACTAAAAACAACAAAGAAGCAGCTCAAACTGAAGATGAAGAAGAACCAGATTTTTTAGA
AAGCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LTX4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

93.064

99.425

0.925
  recA Acinetobacter baylyi ADP1

92.264

100

0.925
  recA Pseudomonas stutzeri DSM 10701

72.334

99.713

0.721
  recA Vibrio cholerae strain A1552

73.414

95.115

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.414

95.115

0.698
  recA Glaesserella parasuis strain SC1401

67.435

99.713

0.672
  recA Neisseria gonorrhoeae MS11

65.805

100

0.658
  recA Neisseria gonorrhoeae MS11

65.805

100

0.658
  recA Neisseria gonorrhoeae strain FA1090

65.805

100

0.658
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.368

0.638
  recA Helicobacter pylori strain NCTC11637

63.343

97.989

0.621
  recA Helicobacter pylori 26695

63.05

97.989

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.391

98.563

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.772

95.977

0.612
  recA Streptococcus mutans UA159

59.195

100

0.592
  recA Streptococcus pneumoniae R6

59.593

98.851

0.589
  recA Streptococcus pneumoniae TIGR4

59.593

98.851

0.589
  recA Streptococcus pneumoniae Rx1

59.593

98.851

0.589
  recA Streptococcus pneumoniae D39

59.593

98.851

0.589
  recA Streptococcus mitis SK321

59.824

97.989

0.586
  recA Streptococcus mitis NCTC 12261

59.531

97.989

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

61.89

94.253

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.444

90.517

0.583
  recA Streptococcus pyogenes NZ131

61.846

93.391

0.578
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.241

0.549

Multiple sequence alignment