Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAH944_RS05380 Genome accession   NZ_CP157399
Coordinates   1067334..1068374 (+) Length   346 a.a.
NCBI ID   WP_415537098.1    Uniprot ID   -
Organism   MAG: Dehalobacter sp. 4CP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1062334..1073374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAH944_RS05365 (AAH944_05325) rimO 1064002..1065327 (+) 1326 WP_415537094.1 30S ribosomal protein S12 methylthiotransferase RimO -
  AAH944_RS05370 (AAH944_05330) pgsA 1065324..1065887 (+) 564 WP_015042384.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AAH944_RS05375 (AAH944_05335) - 1065957..1067201 (+) 1245 WP_415537096.1 competence/damage-inducible protein A -
  AAH944_RS05380 (AAH944_05340) recA 1067334..1068374 (+) 1041 WP_415537098.1 recombinase RecA Machinery gene
  AAH944_RS05385 (AAH944_05345) - 1068364..1068894 (+) 531 WP_415537100.1 regulatory protein RecX -
  AAH944_RS05390 (AAH944_05350) rny 1069144..1070712 (+) 1569 WP_415537789.1 ribonuclease Y -
  AAH944_RS05395 (AAH944_05355) - 1070976..1071533 (+) 558 WP_415537102.1 hypothetical protein -
  AAH944_RS05400 (AAH944_05360) - 1071567..1072337 (+) 771 WP_415537104.1 TIGR00282 family metallophosphoesterase -
  AAH944_RS05405 (AAH944_05365) - 1072490..1072750 (+) 261 WP_015042391.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37279.68 Da        Isoelectric Point: 5.7356

>NTDB_id=1006639 AAH944_RS05380 WP_415537098.1 1067334..1068374(+) (recA) [MAG: Dehalobacter sp. 4CP]
MATPDKLKALDIALSQIEKQFGKGAIMKLGEASDRMAVETISTGSLALDLALGVGGVPRGRVIEVYGPESSGKTTVTLHI
IAEAQKTGGVAAFIDAEHALDPVYARALGVNVDDLLVSQPDTGEQALEICEALVRSGAVDVVVIDSVAALVPRAEIEGEM
GDSHMGLHARLMSQALRKLTGCISKSHTCVIFINQIREKVGVMFGNPETTTGGRALKFYASVRLEVKKQDVIKQGQEIIG
NRTRVKVVKNKVAPPFNFADFDLVYGEGISREGSIVDMGSETGILMKSGAWYSYNGERLGQGRENVKDFLRQHPDIAAEI
ERKVRDLVLISKDKTKGAQDDSMNDE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1006639 AAH944_RS05380 WP_415537098.1 1067334..1068374(+) (recA) [MAG: Dehalobacter sp. 4CP]
ATGGCTACTCCAGATAAACTGAAAGCATTGGATATTGCGCTGAGCCAAATTGAAAAGCAGTTTGGCAAGGGAGCGATTAT
GAAACTCGGCGAAGCTTCGGACAGAATGGCTGTTGAGACGATTTCAACAGGTTCATTGGCCCTGGATTTGGCTTTAGGCG
TTGGCGGAGTTCCCAGAGGCCGGGTAATAGAGGTATATGGACCGGAGTCTTCGGGAAAAACCACCGTAACGCTGCATATT
ATTGCTGAGGCACAGAAAACAGGTGGCGTTGCAGCTTTTATTGATGCGGAGCATGCCCTTGACCCGGTATATGCCCGTGC
GCTGGGTGTGAATGTCGACGATCTGCTGGTCTCCCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCTGTGAAGCCCTTG
TTCGCAGCGGCGCGGTTGATGTTGTCGTTATTGACTCGGTGGCGGCACTCGTGCCACGGGCTGAAATCGAAGGGGAGATG
GGCGATTCCCATATGGGGCTGCATGCCCGTCTGATGTCCCAGGCGTTGCGCAAGCTTACCGGGTGCATCAGTAAAAGCCA
TACTTGTGTCATCTTTATTAATCAGATCAGGGAGAAAGTCGGCGTGATGTTCGGCAACCCGGAGACGACGACCGGAGGAC
GGGCACTGAAATTTTATGCTTCAGTCCGGCTGGAAGTCAAAAAGCAGGATGTCATCAAGCAGGGGCAGGAAATCATCGGC
AATCGGACCCGCGTAAAGGTCGTCAAAAACAAGGTTGCACCGCCGTTTAACTTTGCTGATTTTGACTTGGTTTATGGCGA
AGGGATATCCAGGGAAGGCAGTATTGTCGATATGGGATCGGAAACAGGTATTCTTATGAAATCGGGTGCCTGGTATTCCT
ACAATGGCGAAAGGCTTGGACAGGGAAGAGAGAATGTCAAGGATTTTCTGCGTCAGCATCCCGATATTGCTGCAGAGATT
GAGAGAAAAGTGCGCGATCTGGTTCTGATCTCGAAAGACAAGACCAAGGGCGCTCAGGACGACAGCATGAATGATGAATA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.429

93.064

0.665
  recA Latilactobacillus sakei subsp. sakei 23K

68

93.931

0.639
  recA Neisseria gonorrhoeae MS11

65.089

97.688

0.636
  recA Neisseria gonorrhoeae MS11

65.089

97.688

0.636
  recA Neisseria gonorrhoeae strain FA1090

65.089

97.688

0.636
  recA Ralstonia pseudosolanacearum GMI1000

69.677

89.595

0.624
  recA Streptococcus mutans UA159

63.235

98.266

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

97.688

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.865

98.844

0.621
  recA Vibrio cholerae strain A1552

62.865

98.844

0.621
  recA Glaesserella parasuis strain SC1401

62.757

98.555

0.619
  recA Streptococcus mitis NCTC 12261

61.143

100

0.618
  recA Streptococcus mitis SK321

61.143

100

0.618
  recA Pseudomonas stutzeri DSM 10701

63.855

95.954

0.613
  recA Streptococcus pyogenes NZ131

64.923

93.931

0.61
  recA Streptococcus pneumoniae R6

59.943

100

0.61
  recA Streptococcus pneumoniae Rx1

59.943

100

0.61
  recA Streptococcus pneumoniae D39

59.943

100

0.61
  recA Streptococcus pneumoniae TIGR4

59.943

100

0.61
  recA Acinetobacter baylyi ADP1

62.13

97.688

0.607
  recA Acinetobacter baumannii D1279779

63.609

94.509

0.601
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

94.22

0.59
  recA Lactococcus lactis subsp. cremoris KW2

63.043

93.064

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

94.509

0.581
  recA Helicobacter pylori 26695

61.846

93.931

0.581
  recA Helicobacter pylori strain NCTC11637

61.846

93.931

0.581

Multiple sequence alignment