Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | QUD86_RS08095 | Genome accession | NZ_AP027274 |
| Coordinates | 1587380..1588468 (-) | Length | 362 a.a. |
| NCBI ID | WP_286296519.1 | Uniprot ID | - |
| Organism | Polynucleobacter sp. TUM22923 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1571596..1599764 | 1587380..1588468 | within | 0 |
Gene organization within MGE regions
Location: 1571596..1599764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUD86_RS07985 (TUM22923_15550) | - | 1571596..1572582 (+) | 987 | WP_286296484.1 | site-specific integrase | - |
| QUD86_RS07990 (TUM22923_15560) | - | 1572752..1573279 (+) | 528 | WP_286296486.1 | hypothetical protein | - |
| QUD86_RS07995 (TUM22923_15570) | - | 1573276..1574859 (+) | 1584 | WP_286296488.1 | AAA family ATPase | - |
| QUD86_RS08000 | - | 1574863..1575183 (+) | 321 | WP_286296491.1 | hypothetical protein | - |
| QUD86_RS08005 (TUM22923_15580) | - | 1575180..1575599 (+) | 420 | WP_286296494.1 | HGGxSTG domain-containing protein | - |
| QUD86_RS08010 (TUM22923_15590) | - | 1575639..1575764 (-) | 126 | WP_286296496.1 | hypothetical protein | - |
| QUD86_RS08015 (TUM22923_15600) | - | 1575761..1575946 (-) | 186 | WP_286296497.1 | hypothetical protein | - |
| QUD86_RS08020 (TUM22923_15610) | - | 1575933..1576103 (-) | 171 | WP_286296498.1 | hypothetical protein | - |
| QUD86_RS08030 (TUM22923_15640) | - | 1577288..1577608 (-) | 321 | WP_286296500.1 | hypothetical protein | - |
| QUD86_RS08035 | - | 1577714..1578106 (-) | 393 | WP_286296502.1 | DNA polymerase | - |
| QUD86_RS08040 (TUM22923_15660) | - | 1577996..1578874 (+) | 879 | WP_286298723.1 | phage/plasmid primase, P4 family | - |
| QUD86_RS08045 (TUM22923_15670) | - | 1579029..1579448 (+) | 420 | WP_286296494.1 | HGGxSTG domain-containing protein | - |
| QUD86_RS08050 (TUM22923_15680) | - | 1579499..1580308 (-) | 810 | WP_286296506.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| QUD86_RS08055 (TUM22923_15690) | - | 1580417..1581211 (-) | 795 | WP_286296509.1 | hypothetical protein | - |
| QUD86_RS08060 (TUM22923_15700) | - | 1581329..1582282 (-) | 954 | WP_286295630.1 | IS30 family transposase | - |
| QUD86_RS08065 | - | 1582827..1582955 (+) | 129 | Protein_1573 | cyclic pyranopterin monophosphate synthase MoaC | - |
| QUD86_RS08070 (TUM22923_15710) | - | 1583041..1583610 (-) | 570 | WP_286296511.1 | pilin | - |
| QUD86_RS08075 (TUM22923_15720) | - | 1583733..1584440 (-) | 708 | WP_286296512.1 | TerC family protein | - |
| QUD86_RS08080 (TUM22923_15730) | sucD | 1584538..1585431 (-) | 894 | WP_286296514.1 | succinate--CoA ligase subunit alpha | - |
| QUD86_RS08085 (TUM22923_15740) | sucC | 1585446..1586615 (-) | 1170 | WP_286296515.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| QUD86_RS08090 (TUM22923_15750) | - | 1586803..1587372 (-) | 570 | WP_286296517.1 | regulatory protein RecX | - |
| QUD86_RS08095 (TUM22923_15760) | recA | 1587380..1588468 (-) | 1089 | WP_286296519.1 | recombinase RecA | Machinery gene |
| QUD86_RS08100 (TUM22923_15770) | - | 1588586..1589119 (-) | 534 | WP_286296520.1 | DUF2878 domain-containing protein | - |
| QUD86_RS08110 (TUM22923_15780) | - | 1589336..1589836 (-) | 501 | WP_286296522.1 | cupin domain-containing protein | - |
| QUD86_RS08115 (TUM22923_15800) | - | 1589864..1590595 (-) | 732 | Protein_1582 | fumarylacetoacetate hydrolase family protein | - |
| QUD86_RS08120 (TUM22923_15810) | - | 1590770..1591636 (-) | 867 | WP_286296524.1 | Brp/Blh family beta-carotene 15,15'-dioxygenase | - |
| QUD86_RS08125 (TUM22923_15820) | - | 1591633..1592829 (-) | 1197 | WP_286296526.1 | lycopene cyclase family protein | - |
| QUD86_RS08130 (TUM22923_15830) | crtI | 1592850..1595285 (-) | 2436 | WP_286296528.1 | phytoene desaturase family protein | - |
| QUD86_RS08135 (TUM22923_15840) | - | 1595282..1596220 (-) | 939 | WP_286296531.1 | polyprenyl synthetase family protein | - |
| QUD86_RS08140 (TUM22923_15850) | - | 1596377..1597171 (-) | 795 | WP_286296534.1 | bacteriorhodopsin-like | - |
| QUD86_RS08145 (TUM22923_15860) | - | 1597428..1598039 (+) | 612 | WP_286296536.1 | MOSC domain-containing protein | - |
| QUD86_RS08150 (TUM22923_15870) | - | 1598094..1599764 (-) | 1671 | WP_286296538.1 | MFS transporter | - |
Sequence
Protein
Download Length: 362 a.a. Molecular weight: 38692.21 Da Isoelectric Point: 4.8857
>NTDB_id=100552 QUD86_RS08095 WP_286296519.1 1587380..1588468(-) (recA) [Polynucleobacter sp. TUM22923]
MALDDKKKSASSEFDGMSGDKQKALSAALAQIEKQFGKGSIMRLGDAEINQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEIVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAIDIETKIRAKLGVKAGTAIVSDVVSEEEEA
MALDDKKKSASSEFDGMSGDKQKALSAALAQIEKQFGKGSIMRLGDAEINQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEIVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAIDIETKIRAKLGVKAGTAIVSDVVSEEEEA
Nucleotide
Download Length: 1089 bp
>NTDB_id=100552 QUD86_RS08095 WP_286296519.1 1587380..1588468(-) (recA) [Polynucleobacter sp. TUM22923]
ATGGCCTTGGATGATAAGAAAAAATCAGCCTCATCAGAGTTTGACGGAATGAGCGGAGATAAGCAAAAAGCATTAAGTGC
AGCTTTGGCGCAAATTGAGAAGCAGTTCGGTAAAGGCTCAATCATGAGATTGGGCGATGCAGAAATTAACCAAGATATTC
AGGTGGTTTCAAGCGGTTCCTTGGGCCTAGACATCGCTTTAGGAGTTGGCGGTTTAGCACGTGGTCGTGTAATCGAGATT
TATGGTCCCGAGTCTTCAGGCAAAACGACATTAACCCTGCATGCAATTGCAGAAATGCAAAAGATCGGCGGTACATGTGC
CTTCATTGACGCTGAGCATGCCTTAGATGTTCAGTACGCTTCACGCCTAGGCGTAGATGTCAATAATTTATTAATTTCTC
AGCCAGATACAGGTGAGCAAGCATTAGAAATCGCAGATGCGTTAGTGCGCTCCGGTTCAATTGACCTCATTGTGATCGAC
TCAGTGGCCGCGTTGGTTCCAAGGGCTGAGATCGAGGGTGACATGGGCGATTCCTTGCCAGGATTGCAAGCGCGTTTGAT
GAGTCAGGCTTTACGTAAACTGACTGGTGCAATCAAGCGAACGAATACGACGGTAATTTTTATTAACCAAATTCGAATGA
AAATTGGCGTGATGTTTGGCTCCCCAGAGACTACTACTGGCGGTAATGCGCTGAAGTTCTATGCCTCTATGCGCTTAGAT
ATTCGTCGCATTGGTAGCATCAAGAAGGGTGATGAAATTGTCGGCAACGAGACTCGCGTTAAAGTGGTGAAGAATAAGGT
ATCCCCTCCGTTTCGTGAGGCAATTTTTGACATCATGTACGGCGCTGGCATCTCAAGAGAAGGTGAGATTATTGATATGG
GCGTTGAGGCGGATATCGTTGAAAAATCTGGTTCTTGGTATAGCTACAACGGAGATCGCATCGGTCAAGGTAAAGATAAC
GTGCGCGAGTTCTTGAAAGAAAATCCAGCAATCGCGATTGATATTGAAACAAAAATTCGTGCGAAGTTGGGCGTGAAGGC
AGGAACGGCAATTGTTAGTGACGTTGTGAGCGAAGAAGAGGAAGCGTAG
ATGGCCTTGGATGATAAGAAAAAATCAGCCTCATCAGAGTTTGACGGAATGAGCGGAGATAAGCAAAAAGCATTAAGTGC
AGCTTTGGCGCAAATTGAGAAGCAGTTCGGTAAAGGCTCAATCATGAGATTGGGCGATGCAGAAATTAACCAAGATATTC
AGGTGGTTTCAAGCGGTTCCTTGGGCCTAGACATCGCTTTAGGAGTTGGCGGTTTAGCACGTGGTCGTGTAATCGAGATT
TATGGTCCCGAGTCTTCAGGCAAAACGACATTAACCCTGCATGCAATTGCAGAAATGCAAAAGATCGGCGGTACATGTGC
CTTCATTGACGCTGAGCATGCCTTAGATGTTCAGTACGCTTCACGCCTAGGCGTAGATGTCAATAATTTATTAATTTCTC
AGCCAGATACAGGTGAGCAAGCATTAGAAATCGCAGATGCGTTAGTGCGCTCCGGTTCAATTGACCTCATTGTGATCGAC
TCAGTGGCCGCGTTGGTTCCAAGGGCTGAGATCGAGGGTGACATGGGCGATTCCTTGCCAGGATTGCAAGCGCGTTTGAT
GAGTCAGGCTTTACGTAAACTGACTGGTGCAATCAAGCGAACGAATACGACGGTAATTTTTATTAACCAAATTCGAATGA
AAATTGGCGTGATGTTTGGCTCCCCAGAGACTACTACTGGCGGTAATGCGCTGAAGTTCTATGCCTCTATGCGCTTAGAT
ATTCGTCGCATTGGTAGCATCAAGAAGGGTGATGAAATTGTCGGCAACGAGACTCGCGTTAAAGTGGTGAAGAATAAGGT
ATCCCCTCCGTTTCGTGAGGCAATTTTTGACATCATGTACGGCGCTGGCATCTCAAGAGAAGGTGAGATTATTGATATGG
GCGTTGAGGCGGATATCGTTGAAAAATCTGGTTCTTGGTATAGCTACAACGGAGATCGCATCGGTCAAGGTAAAGATAAC
GTGCGCGAGTTCTTGAAAGAAAATCCAGCAATCGCGATTGATATTGAAACAAAAATTCGTGCGAAGTTGGGCGTGAAGGC
AGGAACGGCAATTGTTAGTGACGTTGTGAGCGAAGAAGAGGAAGCGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.