Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABI138_RS04765 Genome accession   NZ_CP157286
Coordinates   1013076..1014260 (+) Length   394 a.a.
NCBI ID   WP_249237470.1    Uniprot ID   -
Organism   Faecalibacterium prausnitzii strain 3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1008076..1019260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABI138_RS04745 (ABI138_04745) - 1008280..1008987 (+) 708 WP_249237474.1 response regulator transcription factor -
  ABI138_RS04750 (ABI138_04750) - 1009507..1010931 (+) 1425 WP_249237473.1 HAMP domain-containing sensor histidine kinase -
  ABI138_RS04755 (ABI138_04755) - 1011043..1011990 (+) 948 WP_348584840.1 DUF1385 domain-containing protein -
  ABI138_RS04760 (ABI138_04760) - 1011984..1012955 (+) 972 WP_348584841.1 HemK/PrmC family methyltransferase -
  ABI138_RS04765 (ABI138_04765) recA 1013076..1014260 (+) 1185 WP_249237470.1 recombinase RecA Machinery gene
  ABI138_RS04770 (ABI138_04770) - 1014261..1014770 (+) 510 WP_348584842.1 RecX family transcriptional regulator -
  ABI138_RS04775 (ABI138_04775) rimO 1014810..1016135 (+) 1326 WP_348584843.1 30S ribosomal protein S12 methylthiotransferase RimO -
  ABI138_RS04780 (ABI138_04780) pgsA 1016154..1016753 (+) 600 WP_348584844.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABI138_RS04785 (ABI138_04785) - 1016833..1017480 (+) 648 WP_097777153.1 hypothetical protein -
  ABI138_RS04790 (ABI138_04790) - 1017708..1018880 (-) 1173 WP_348584845.1 trigger factor -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 42120.94 Da        Isoelectric Point: 5.3814

>NTDB_id=1005412 ABI138_RS04765 WP_249237470.1 1013076..1014260(+) (recA) [Faecalibacterium prausnitzii strain 3]
MAKNQNNNTVVPATKKTEPEAKKDALATALAQIEKQFGKGAVMKLGDNASMQVDAISTGSLGLDLALGVGGVPRGRIIEV
YGPESSGKTTLALHILAEAQKQGGEVAFIDVEHALDPTYAEALGVDINNLLVSQPDTGEQAMEICEALVRSGAIDAIVVD
SVAAMVPRAEIEGEMGDSHVGLQARLMSQAMRKLTSVIGKTNTVCVFINQLREKVGVMYGNPEVTTGGRALKYYASVRID
IRRVEGLKDSSGQFIGNHTRAKIVKNKVAPPFREAEFDIMFGEGISKMSELIDVGVKLGIVQKSGAWFNYGDVRLGQGRD
NAKQFLKDNPEIANDIEGQIRANADKLYASRRPAGKNASSKAEEPAEAAKDAKEPVVKAPARSSESELDIMVED

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=1005412 ABI138_RS04765 WP_249237470.1 1013076..1014260(+) (recA) [Faecalibacterium prausnitzii strain 3]
ATGGCGAAAAATCAGAACAACAACACCGTTGTCCCGGCCACCAAAAAGACCGAGCCGGAGGCAAAAAAGGACGCACTGGC
CACTGCGCTGGCCCAGATCGAAAAGCAGTTCGGCAAGGGTGCCGTGATGAAGCTGGGCGACAACGCCTCCATGCAGGTGG
ATGCCATTTCCACTGGCAGTCTGGGTCTGGATCTGGCTCTGGGCGTGGGCGGTGTGCCCCGCGGACGCATCATTGAGGTG
TACGGCCCGGAATCCAGCGGTAAGACCACGCTGGCACTGCACATTCTGGCCGAGGCCCAGAAGCAGGGCGGCGAAGTGGC
CTTCATTGACGTGGAGCACGCACTGGACCCCACCTATGCCGAAGCGCTGGGCGTGGACATCAATAATCTCCTGGTCAGCC
AGCCGGACACCGGCGAGCAGGCCATGGAGATCTGCGAAGCGCTGGTGCGCTCCGGTGCCATCGATGCCATCGTGGTGGAC
TCGGTTGCCGCCATGGTGCCGAGGGCTGAGATCGAGGGCGAAATGGGCGACAGCCATGTGGGCCTGCAGGCCCGTCTGAT
GAGTCAGGCCATGCGCAAGCTGACCTCGGTCATCGGCAAGACCAACACGGTCTGCGTCTTCATCAACCAGCTGCGCGAGA
AGGTGGGCGTGATGTACGGCAACCCGGAGGTCACCACCGGCGGCCGCGCCCTGAAATATTACGCCTCGGTGCGCATCGAC
ATCCGCCGCGTGGAGGGCCTGAAGGATTCCTCCGGCCAGTTCATCGGCAACCACACCCGCGCCAAGATCGTCAAGAACAA
GGTGGCACCTCCGTTCCGTGAGGCAGAGTTCGATATCATGTTCGGCGAGGGCATCTCCAAGATGAGCGAGCTCATCGATG
TGGGCGTGAAGCTGGGCATCGTGCAGAAGAGCGGCGCATGGTTCAACTATGGCGATGTCCGTCTGGGTCAGGGCCGCGAC
AACGCAAAGCAGTTCCTGAAGGACAATCCCGAGATCGCAAACGATATCGAGGGCCAGATCCGCGCCAATGCCGACAAGCT
GTACGCTTCCCGCCGCCCGGCTGGCAAGAATGCTTCTTCCAAGGCCGAAGAGCCTGCAGAAGCGGCAAAGGACGCTAAGG
AGCCGGTGGTCAAGGCACCTGCCCGCAGCAGCGAGAGCGAGCTGGATATCATGGTGGAGGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(25-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

64.307

86.041

0.553
  recA Helicobacter pylori strain NCTC11637

67.492

81.98

0.553
  recA Helicobacter pylori 26695

67.183

81.98

0.551
  recA Bacillus subtilis subsp. subtilis str. 168

67.081

81.726

0.548
  recA Pseudomonas stutzeri DSM 10701

60.623

89.594

0.543
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

81.472

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.575

84.772

0.53
  recA Neisseria gonorrhoeae MS11

61.834

85.787

0.53
  recA Neisseria gonorrhoeae strain FA1090

61.834

85.787

0.53
  recA Neisseria gonorrhoeae MS11

61.834

85.787

0.53
  recA Streptococcus pyogenes NZ131

60.174

87.31

0.525
  recA Streptococcus mutans UA159

61.934

84.01

0.52
  recA Vibrio cholerae strain A1552

63.354

81.726

0.518
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

81.726

0.518
  recA Streptococcus mitis NCTC 12261

61.92

81.98

0.508
  recA Lactococcus lactis subsp. cremoris KW2

60.241

84.264

0.508
  recA Latilactobacillus sakei subsp. sakei 23K

62.305

81.472

0.508
  recA Streptococcus mitis SK321

61.61

81.98

0.505
  recA Acinetobacter baylyi ADP1

62.187

81.218

0.505
  recA Ralstonia pseudosolanacearum GMI1000

63.666

78.934

0.503
  recA Acinetobacter baumannii D1279779

61.491

81.726

0.503
  recA Streptococcus pneumoniae D39

61.111

82.234

0.503
  recA Streptococcus pneumoniae Rx1

61.111

82.234

0.503
  recA Streptococcus pneumoniae R6

61.111

82.234

0.503
  recA Streptococcus pneumoniae TIGR4

61.111

82.234

0.503
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.14

86.802

0.487

Multiple sequence alignment