Detailed information NTG1004699

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: ABIS04_RS13920
• Genome accession: NZ_CP157213
• Coordinates: 3216310..3217371 (-)
• Length: 353 a.a.
• NCBI ID: WP_140234835.1
• Uniprot ID: A0A4Y5YHZ0
• Organism: Shewanella sp. H8
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3211310..3222371

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABIS04_RS13910 (ABIS04_13895)	csrA	3212446..3212643 (-)	198	WP_076496509.1	carbon storage regulator CsrA	-
ABIS04_RS13915 (ABIS04_13900)	alaS	3213085..3215709 (-)	2625	WP_350431446.1	alanine--tRNA ligase	-
ABIS04_RS13920 (ABIS04_13905)	recA	3216310..3217371 (-)	1062	WP_140234835.1	recombinase RecA	Machinery gene
ABIS04_RS13925 (ABIS04_13910)	mutS	3217655..3220237 (+)	2583	WP_350431447.1	DNA mismatch repair protein MutS	-
ABIS04_RS13930 (ABIS04_13915)	rpoS	3220710..3221681 (-)	972	WP_137226369.1	RNA polymerase sigma factor RpoS	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 37527.04 Da
• Isoelectric Point: 5.0312

>NTDB_id=1004699 ABIS04_RS13920 WP_140234835.1 3216310..3217371(-) (recA) [Shewanella sp. H8]
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRTMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKNGDEVIG
NETRVKVVKNKIAAPFKQAEFQILYGLGINRTGELVDLGVAHKLVDKAGAWYSYKGEKIGQGRANAGKFLTENPAIANEI
DTTLRAMLLAAPGSLGSSTDSDENVDLETGEVF

Nucleotide

• Length: 1062 bp

>NTDB_id=1004699 ABIS04_RS13920 WP_140234835.1 3216310..3217371(-) (recA) [Shewanella sp. H8]
ATGAAGGTTGATCCAAATAAAGAGAAAGCACTTGCCGCCGTGTTAAGTCAAATTGAAAAGCAATTTGGTAAAGGCTCAAT
TATGAAATTGGGCGAAGATCGCACAATGGATGTTGAAACTATCTCTACAGGTTCACTTTCATTGGATGTCGCCCTAGGTG
CTGGTGGTTTACCATTAGGACGTATTGTTGAGATCTATGGCCCTGAATCATCAGGTAAAACAACATTAACACTTGAAGTG
ATTGCTGCAGCACAACGCGAAGGTAAAACCTGTGCGTTTATTGATGCAGAGCATGCACTTGACCCTATTTATGCAAAAAA
GCTAGGCGTAGATATTGATAACCTACTTTGTTCGCAGCCAGACACTGGCGAGCAAGCATTAGAAATTTGTGACGCATTAA
CCCGTTCTGGTGCTGTAGATGTTATTGTTGTCGATTCTGTTGCTGCATTAACGCCAAAAGCCGAAATTGAAGGTGAAATT
GGTGATTCACATATGGGCCTTGCTGCTCGTATGATGAGCCAAGCAATGCGCAAACTTGCTGGTAACCTTAAGCAATCAAA
TACTTTGCTTATTTTTATTAACCAAATTCGTATGAAAATTGGTGTGATGTTTGGTAGTCCAGAAACAACTACTGGTGGTA
ACGCACTGAAGTTTTACGCTTCTGTTCGTTTAGATATTCGTCGTATCGGTGCCATTAAAAACGGTGATGAAGTTATCGGT
AACGAAACCCGCGTAAAAGTCGTTAAAAATAAAATTGCAGCACCATTTAAGCAAGCTGAATTCCAAATTCTTTATGGATT
AGGTATTAATCGTACCGGCGAGTTGGTTGACTTAGGCGTTGCACATAAGCTTGTTGATAAAGCAGGTGCTTGGTATAGCT
ACAAAGGTGAAAAAATTGGTCAAGGCCGTGCAAATGCAGGTAAATTCCTGACTGAAAATCCAGCTATTGCCAATGAAATC
GACACCACTTTGCGTGCTATGCTATTAGCTGCTCCAGGCTCATTAGGCTCAAGCACTGACAGCGACGAGAATGTTGATCT
CGAAACTGGCGAAGTTTTCTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

3D structure

• AlphaFold DB: A0A4Y5YHZ0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	82.875	92.635	0.768
recA	Vibrio cholerae O1 biovar El Tor strain E7946	82.875	92.635	0.768
recA	Pseudomonas stutzeri DSM 10701	74.312	92.635	0.688
recA	Acinetobacter baylyi ADP1	70.231	98.017	0.688
recA	Acinetobacter baumannii D1279779	69.565	97.734	0.68
recA	Glaesserella parasuis strain SC1401	68.605	97.45	0.669
recA	Ralstonia pseudosolanacearum GMI1000	69.939	92.351	0.646
recA	Neisseria gonorrhoeae MS11	69.04	91.501	0.632
recA	Neisseria gonorrhoeae MS11	69.04	91.501	0.632
recA	Neisseria gonorrhoeae strain FA1090	69.04	91.501	0.632
recA	Streptococcus pneumoniae D39	59.599	98.867	0.589
recA	Streptococcus pneumoniae TIGR4	59.599	98.867	0.589
recA	Streptococcus pneumoniae R6	59.599	98.867	0.589
recA	Streptococcus pneumoniae Rx1	59.599	98.867	0.589
recA	Streptococcus mitis NCTC 12261	58.807	99.717	0.586
recA	Streptococcus mitis SK321	59.538	98.017	0.584
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.896	94.901	0.578
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.963	91.785	0.578
recA	Helicobacter pylori strain NCTC11637	61.963	92.351	0.572
recA	Streptococcus mutans UA159	61.585	92.918	0.572
recA	Bacillus subtilis subsp. subtilis str. 168	62.813	90.652	0.569
recA	Helicobacter pylori 26695	61.656	92.351	0.569
recA	Streptococcus pyogenes NZ131	60.976	92.918	0.567
recA	Lactococcus lactis subsp. cremoris KW2	60.182	93.201	0.561
recA	Latilactobacillus sakei subsp. sakei 23K	61.25	90.652	0.555
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.385	92.068	0.547