Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABEF87_RS07110 Genome accession   NZ_CP156789
Coordinates   1420943..1421986 (-) Length   347 a.a.
NCBI ID   WP_034582462.1    Uniprot ID   A0A0A3X704
Organism   Acinetobacter thermotolerans strain ANC 7919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1415943..1426986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF87_RS07085 (ABEF87_07085) tnpA 1416962..1417375 (-) 414 WP_075167884.1 IS200/IS605 family transposase -
  ABEF87_RS07090 (ABEF87_07090) - 1417396..1418454 (+) 1059 WP_034586922.1 RNA-guided endonuclease TnpB family protein -
  ABEF87_RS07095 (ABEF87_07095) - 1418468..1419289 (-) 822 WP_347453961.1 YbgF trimerization domain-containing protein -
  ABEF87_RS07105 (ABEF87_07105) - 1420240..1420857 (-) 618 WP_347453962.1 regulatory protein RecX -
  ABEF87_RS07110 (ABEF87_07110) recA 1420943..1421986 (-) 1044 WP_034582462.1 recombinase RecA Machinery gene
  ABEF87_RS07115 (ABEF87_07115) - 1422131..1422571 (-) 441 WP_034582459.1 RNA-binding S4 domain-containing protein -
  ABEF87_RS07120 (ABEF87_07120) - 1422564..1423250 (-) 687 WP_034582456.1 HAD-IA family hydrolase -
  ABEF87_RS07125 (ABEF87_07125) - 1423263..1424114 (+) 852 WP_034582454.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ABEF87_RS07130 (ABEF87_07130) - 1424175..1424924 (+) 750 WP_347453963.1 phosphoglycerate mutase family protein -
  ABEF87_RS07135 (ABEF87_07135) - 1425197..1426255 (-) 1059 WP_347455746.1 transposase -
  ABEF87_RS07140 (ABEF87_07140) tnpA 1426276..1426689 (+) 414 WP_075167884.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37703.15 Da        Isoelectric Point: 4.9413

>NTDB_id=1002810 ABEF87_RS07110 WP_034582462.1 1420943..1421986(-) (recA) [Acinetobacter thermotolerans strain ANC 7919]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIIEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDHGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIVQKAGAWYSYQGDKIGQGKNNTIRYLEENPELAQTIEK
LIREQLLTTGNVVEDKDEEEPADFLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1002810 ABEF87_RS07110 WP_034582462.1 1420943..1421986(-) (recA) [Acinetobacter thermotolerans strain ANC 7919]
ATGGATGAGAATAAAAGCAAGGCGCTGAATGCTGCCTTAAGCCAAATTGAAAAGCAATTTGGTAAAAACACAGTAATGCG
TCTTGGTGATAATACCGTTCAGGCGGTTGAAGCTGTATCTACAGGTTCTTTAACGCTGGATATCGCACTCGGTATTGGCG
GTTTACCTAAAGGCCGTATTATCGAAATTTATGGTCCTGAATCTTCAGGTAAAACCACAATGACTCTGCAAGCAATTGCA
CAATGTCAGAAAGCTGGTGGTACCTGTGCATTCATCGATGCCGAACATGCGCTTGATCCTCAATATGCACGTAAACTCGG
TGTAGATATCGACAACTTGTTGGTTTCCCAGCCAGACCATGGTGAACAGGCACTGGAAATCGCCGACATGTTGGTACGTT
CAGGTGCGATTGATCTGATCGTTGTCGACTCTGTTGCTGCATTGACTCCTCGTGCCGAAATCGAAGGTGAAATGGGCGAC
TCGCACATGGGTCTGCAAGCGCGTTTGATGAGCCAGGCGCTGCGTAAAATTACCGGTAATGCCAAACGTTCTAACTGTAT
GGTGATCTTCATTAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAGCCCGGAAACCACAACTGGTGGTAATGCAC
TGAAATTTTACGCTTCTGTACGTCTAGACATCCGTCGTATCGGTCAGGTAAAAGAAGGCGACGAAATCATTGGTTCAGAA
ACTAAAGTTAAAGTCGTGAAAAACAAAATGGCACCTCCGTTCAAGGAAGCACTGTTCCAGATCCTTTATGGCAAAGGTGT
CAACCATCTCGGTGAATTGATTGATCTTGCTGTACAACAAGAGATCGTTCAAAAAGCGGGTGCTTGGTATTCATATCAAG
GTGACAAGATTGGTCAAGGTAAGAACAATACCATTCGCTACCTCGAAGAGAATCCTGAACTTGCTCAAACCATTGAGAAA
CTGATTCGTGAACAGCTTCTGACTACTGGTAATGTAGTGGAAGACAAAGACGAAGAAGAACCAGCCGACTTTCTGGATGC
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3X704

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

90.831

100

0.914
  recA Acinetobacter baylyi ADP1

90.571

100

0.914
  recA Pseudomonas stutzeri DSM 10701

76.292

94.813

0.723
  recA Vibrio cholerae strain A1552

74.096

95.677

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.096

95.677

0.709
  recA Glaesserella parasuis strain SC1401

68.391

100

0.686
  recA Ralstonia pseudosolanacearum GMI1000

72.293

90.49

0.654
  recA Neisseria gonorrhoeae MS11

67.901

93.372

0.634
  recA Neisseria gonorrhoeae MS11

67.901

93.372

0.634
  recA Neisseria gonorrhoeae strain FA1090

67.901

93.372

0.634
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.235

97.983

0.62
  recA Helicobacter pylori strain NCTC11637

62.832

97.695

0.614
  recA Helicobacter pylori 26695

62.537

97.695

0.611
  recA Streptococcus pneumoniae R6

61.047

99.135

0.605
  recA Streptococcus pneumoniae TIGR4

61.047

99.135

0.605
  recA Streptococcus pneumoniae Rx1

61.047

99.135

0.605
  recA Streptococcus pneumoniae D39

61.047

99.135

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

95.389

0.605
  recA Streptococcus mutans UA159

61.224

98.847

0.605
  recA Streptococcus mitis NCTC 12261

60.35

98.847

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.038

91.354

0.585
  recA Streptococcus mitis SK321

62.27

93.948

0.585
  recA Streptococcus pyogenes NZ131

62.154

93.66

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

92.795

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.084

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

92.507

0.542

Multiple sequence alignment