Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABFY19_RS06920 Genome accession   NZ_CP156677
Coordinates   1462288..1463313 (-) Length   341 a.a.
NCBI ID   WP_418789929.1    Uniprot ID   -
Organism   Phosphitispora sp. TUW77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1457288..1468313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFY19_RS06895 (ABFY19_06860) spoVS 1458043..1458303 (-) 261 WP_041587715.1 stage V sporulation protein SpoVS -
  ABFY19_RS06900 (ABFY19_06865) - 1458444..1459223 (-) 780 WP_418789925.1 TIGR00282 family metallophosphoesterase -
  ABFY19_RS06905 (ABFY19_06870) - 1459241..1459765 (-) 525 WP_418789926.1 hypothetical protein -
  ABFY19_RS06910 (ABFY19_06875) rny 1459957..1461477 (-) 1521 WP_418789927.1 ribonuclease Y -
  ABFY19_RS06915 (ABFY19_06880) - 1461814..1462287 (-) 474 WP_418789928.1 regulatory protein RecX -
  ABFY19_RS06920 (ABFY19_06885) recA 1462288..1463313 (-) 1026 WP_418789929.1 recombinase RecA Machinery gene
  ABFY19_RS06925 (ABFY19_06890) - 1463381..1463866 (-) 486 WP_418789930.1 hypothetical protein -
  ABFY19_RS06930 (ABFY19_06895) - 1463933..1465525 (-) 1593 Protein_1351 DEAD/DEAH box helicase -
  ABFY19_RS06935 (ABFY19_06900) - 1465599..1466879 (-) 1281 WP_418789931.1 competence/damage-inducible protein A -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36590.12 Da        Isoelectric Point: 6.0801

>NTDB_id=1002044 ABFY19_RS06920 WP_418789929.1 1462288..1463313(-) (recA) [Phosphitispora sp. TUW77]
MSDKIKALEMALNQIEKQFGKGSIMKLGEAAAKMNVEVIPTGALSLDIALGVGGIPRGRVVEIYGPESSGKTTVALHILA
EAQKMGGTAAFIDAEHALDPIYARKLGVDIDNLLVSQPDTGEQALEIAEALVRSGAVDVIVVDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLTGAISKSHTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLEVRKTETLKHGADIVGVR
TKVKVVKNKVAPPFKQADFDIMYGEGISREGSIVDIATEMKIIDKSGAWYSYNGDRLGQGRENVKEFLKDNAAIAEEIET
KIREVLKPIVAANQASTTNEE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=1002044 ABFY19_RS06920 WP_418789929.1 1462288..1463313(-) (recA) [Phosphitispora sp. TUW77]
ATGTCAGATAAAATTAAAGCTCTGGAAATGGCTTTAAACCAGATTGAAAAACAGTTTGGCAAAGGTTCAATTATGAAACT
TGGTGAAGCAGCAGCCAAGATGAATGTTGAAGTAATTCCTACAGGCGCTTTAAGCCTGGATATTGCGTTGGGAGTTGGCG
GTATTCCAAGAGGAAGAGTTGTGGAAATATATGGTCCCGAATCATCAGGCAAAACTACGGTGGCTTTACATATTCTTGCA
GAAGCCCAGAAAATGGGTGGAACAGCAGCATTTATAGATGCTGAACATGCTCTTGATCCTATTTACGCCCGAAAACTTGG
AGTTGATATAGATAATTTACTGGTTTCTCAACCAGATACGGGTGAACAGGCCCTGGAAATTGCAGAAGCCTTAGTCAGAA
GCGGGGCAGTTGATGTAATTGTTGTTGATTCGGTTGCCGCTCTTGTTCCCAGAGCAGAAATTGAAGGGGAAATGGGTGAT
TCTCATGTGGGACTACAAGCCAGATTGATGTCACAGGCCCTTAGAAAGTTAACCGGCGCAATATCTAAATCTCATACGGT
GGCTATTTTCATCAACCAGCTCAGGGAAAAAGTTGGGGTTATGTTTGGAAATCCTGAAACAACTCCAGGTGGAAGGGCAC
TCAAATTTTATGCATCTGTGAGGCTTGAAGTCAGAAAAACTGAGACCCTGAAACACGGAGCAGATATTGTTGGTGTGCGT
ACAAAAGTTAAAGTGGTCAAAAACAAAGTAGCACCTCCTTTTAAACAGGCTGATTTTGATATCATGTATGGTGAGGGCAT
TTCACGAGAAGGAAGTATCGTTGATATTGCCACAGAAATGAAAATCATTGATAAAAGTGGAGCCTGGTACTCTTATAATG
GTGACCGCCTAGGACAGGGCAGGGAAAATGTTAAGGAATTCCTCAAAGATAATGCTGCTATAGCTGAGGAGATTGAAACC
AAGATAAGAGAAGTTTTAAAACCGATTGTTGCTGCTAACCAAGCCAGCACCACTAACGAAGAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

74.074

95.015

0.704
  recA Ralstonia pseudosolanacearum GMI1000

67.781

96.481

0.654
  recA Latilactobacillus sakei subsp. sakei 23K

70.032

92.962

0.651
  recA Streptococcus mitis NCTC 12261

67.702

94.428

0.639
  recA Streptococcus pyogenes NZ131

67.391

94.428

0.636
  recA Streptococcus mutans UA159

67.391

94.428

0.636
  recA Vibrio cholerae strain A1552

66.975

95.015

0.636
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.975

95.015

0.636
  recA Streptococcus mitis SK321

66.564

95.601

0.636
  recA Acinetobacter baumannii D1279779

66.667

95.015

0.633
  recA Streptococcus pneumoniae Rx1

66.258

95.601

0.633
  recA Streptococcus pneumoniae R6

66.258

95.601

0.633
  recA Streptococcus pneumoniae TIGR4

66.258

95.601

0.633
  recA Streptococcus pneumoniae D39

66.258

95.601

0.633
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.152

96.774

0.631
  recA Neisseria gonorrhoeae MS11

66.667

94.135

0.628
  recA Neisseria gonorrhoeae strain FA1090

66.667

94.135

0.628
  recA Neisseria gonorrhoeae MS11

66.667

94.135

0.628
  recA Acinetobacter baylyi ADP1

66.049

95.015

0.628
  recA Lactococcus lactis subsp. cremoris KW2

65.031

95.601

0.622
  recA Pseudomonas stutzeri DSM 10701

62.242

99.413

0.619
  recA Glaesserella parasuis strain SC1401

65.325

94.721

0.619
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.497

95.601

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.692

95.308

0.607
  recA Helicobacter pylori strain NCTC11637

62.539

94.721

0.592
  recA Helicobacter pylori 26695

62.539

94.721

0.592

Multiple sequence alignment