Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABDB91_RS07030 Genome accession   NZ_CP156660
Coordinates   1484157..1485197 (+) Length   346 a.a.
NCBI ID   WP_347490908.1    Uniprot ID   -
Organism   Desulfoscipio sp. XC116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1479157..1490197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDB91_RS07010 (ABDB91_07010) pgsA 1480426..1480971 (+) 546 WP_347490903.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABDB91_RS07015 (ABDB91_07015) - 1481141..1481728 (+) 588 WP_347490905.1 hypothetical protein -
  ABDB91_RS07020 (ABDB91_07020) - 1481718..1483208 (+) 1491 WP_347490906.1 AAA family ATPase -
  ABDB91_RS07025 (ABDB91_07025) - 1483539..1484081 (+) 543 WP_347490907.1 nicotinamide-nucleotide amidohydrolase family protein -
  ABDB91_RS07030 (ABDB91_07030) recA 1484157..1485197 (+) 1041 WP_347490908.1 recombinase RecA Machinery gene
  ABDB91_RS07035 (ABDB91_07035) - 1485203..1485679 (+) 477 WP_347490909.1 regulatory protein RecX -
  ABDB91_RS07040 (ABDB91_07040) rny 1485976..1487523 (+) 1548 WP_347490910.1 ribonuclease Y -
  ABDB91_RS07045 (ABDB91_07045) - 1487714..1488241 (+) 528 WP_347490911.1 hypothetical protein -
  ABDB91_RS07050 (ABDB91_07050) - 1488257..1489036 (+) 780 WP_347491549.1 TIGR00282 family metallophosphoesterase -
  ABDB91_RS07055 (ABDB91_07055) - 1489157..1489417 (+) 261 WP_161822673.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37026.60 Da        Isoelectric Point: 6.9782

>NTDB_id=1001908 ABDB91_RS07030 WP_347490908.1 1484157..1485197(+) (recA) [Desulfoscipio sp. XC116]
MTDKQKALENALQHIEKQFGKGSIMKLGENAARLNVEVISTGSISLDVALGVGGVPRGRVVEIFGPESSGKTTVALHIIA
QAQKAGGLAAFIDAEHALDAAYAGKIGVDIENLYVSQPDTGEQALEIAEHLVRSGAMDLVVIDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLTGVISKSRCTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVRKIDSLKQGTDVIGNR
TKVKVVKNKVAPPFKQAEFDIMYGAGISREGCILDVAVDMGVVNKSGAWYSYKEERLGQGRENVKELLKERLELAEELEI
AVRQKVGLPVPGQQAQTAVDGATKVD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1001908 ABDB91_RS07030 WP_347490908.1 1484157..1485197(+) (recA) [Desulfoscipio sp. XC116]
TTGACTGACAAGCAAAAGGCATTGGAGAATGCACTTCAGCATATTGAAAAGCAATTTGGCAAGGGTTCCATCATGAAATT
GGGCGAGAATGCAGCCAGGTTAAATGTGGAAGTTATTTCTACAGGCTCTATATCCCTGGATGTGGCTCTGGGGGTGGGCG
GTGTGCCCCGGGGCAGAGTGGTGGAAATATTCGGCCCCGAATCGTCGGGCAAGACCACTGTGGCATTGCATATTATTGCT
CAGGCGCAAAAGGCCGGGGGGCTTGCGGCCTTTATTGATGCCGAGCATGCTTTGGACGCTGCTTATGCCGGTAAAATCGG
CGTAGATATTGAAAATCTTTATGTATCTCAGCCCGATACCGGGGAGCAAGCGCTGGAAATAGCGGAACATTTGGTGCGCA
GCGGTGCTATGGATCTGGTGGTTATTGACAGCGTGGCTGCGTTGGTGCCCAGAGCTGAAATTGAGGGTGAAATGGGCGAT
GCTCATGTGGGATTGCAGGCCAGGTTGATGTCCCAGGCATTGCGTAAACTAACCGGTGTAATTAGCAAATCCCGCTGTAC
GGCTATTTTCATTAACCAGTTAAGAGAAAAAGTGGGGGTAATGTTTGGCAGTCCGGAAACAACGCCCGGTGGACGGGCAC
TGAAGTTTTACGCTTCTGTGCGCCTGGATGTGCGTAAAATTGATAGCTTAAAGCAGGGAACTGATGTTATCGGTAACCGG
ACTAAAGTAAAGGTAGTTAAAAATAAGGTAGCACCGCCGTTTAAACAGGCCGAGTTTGACATTATGTACGGGGCCGGTAT
CTCCCGTGAAGGCTGTATACTGGATGTGGCGGTGGATATGGGAGTGGTTAATAAAAGCGGGGCCTGGTATTCCTATAAAG
AGGAACGGTTGGGACAGGGCCGGGAAAATGTCAAGGAACTGCTTAAAGAACGGTTGGAATTGGCGGAAGAGTTGGAAATA
GCGGTGCGCCAAAAGGTGGGGTTGCCTGTTCCGGGTCAACAAGCTCAGACTGCAGTTGATGGAGCTACCAAGGTGGATTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

68.902

94.798

0.653
  recA Ralstonia pseudosolanacearum GMI1000

70.382

90.751

0.639
  recA Latilactobacillus sakei subsp. sakei 23K

64.012

97.977

0.627
  recA Streptococcus mitis NCTC 12261

62.356

100

0.627
  recA Streptococcus mitis SK321

62.069

100

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

95.087

0.624
  recA Streptococcus pneumoniae TIGR4

64.848

95.376

0.618
  recA Streptococcus pneumoniae Rx1

64.848

95.376

0.618
  recA Streptococcus pneumoniae D39

64.848

95.376

0.618
  recA Streptococcus pneumoniae R6

64.848

95.376

0.618
  recA Helicobacter pylori 26695

62.908

97.399

0.613
  recA Neisseria gonorrhoeae MS11

65.732

92.775

0.61
  recA Neisseria gonorrhoeae strain FA1090

65.732

92.775

0.61
  recA Neisseria gonorrhoeae MS11

65.732

92.775

0.61
  recA Helicobacter pylori strain NCTC11637

62.611

97.399

0.61
  recA Lactococcus lactis subsp. cremoris KW2

63.939

95.376

0.61
  recA Streptococcus pyogenes NZ131

63.526

95.087

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

94.509

0.604
  recA Streptococcus mutans UA159

63.03

95.376

0.601
  recA Vibrio cholerae strain A1552

62.997

94.509

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.997

94.509

0.595
  recA Acinetobacter baylyi ADP1

63.58

93.642

0.595
  recA Acinetobacter baumannii D1279779

63.272

93.642

0.592
  recA Pseudomonas stutzeri DSM 10701

62.963

93.642

0.59
  recA Glaesserella parasuis strain SC1401

61.92

93.353

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.091

91.618

0.578

Multiple sequence alignment