Pseudomonas protegens
Experimental investigation has been performed.
Bioinformatics investigation has been performed| T6SS ID | Type | Organism | Replicon (Accession) | Location | Function |
|---|---|---|---|---|---|
| T6SS00764 | i3 | Pseudomonas protegens CHA0 | chromosome (NC_021237) | 6697981..6718631 | anti-bacterial; anti-eukaryotic |
| T6SS00035 | i3 | Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 6897920..6930515 | anti-bacterial; effector translocation |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Regulator ID | Locus tag (Gene) | Related T6SS | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|---|
| REG0091 |
PFL_RS17995 (gacA/uvrY/SirA) | T6SS00035 |
protein | TCS-RR | Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 4110513..4111154 (-) | 499374263 | T6SS transcripts (↓) |
| REG0092 |
PFL_RS30815 (pppA) | T6SS00035 |
protein | Tpp | Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 6902924..6903658 (-) | 499376669 | Hcp secretion (↑) |
| REG0367 |
H78_RS02920 (Hfq) | - | protein | QS regulatory pathway | Pseudomonas protegens strain H78 | chromosome (NZ_CP013184) | 662937..663197 (+) | 495196588 | T6SS transcription level (↓) |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Related T6SS | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|---|
| EFF01474 |
PFL_6096 (rhsA) | Tde | IMU00300 |
T6SS00035 |
Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 6925413..6929873 (+) | 68347678 |
| EFF00045 |
PFL_5498 (Tae3) | Tae | IMU00073 |
T6SS00035 |
Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 6278373..6278744 (+) | 70732799 |
| EFF00434 |
PFL_3037 (Tge2) | Tge | IMU00074 |
T6SS00035 |
Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 3502760..3503293 (-) | 70730402 |
| EFF01475 |
PFL_6209 (Tne2) | Tne | IMU00301 |
T6SS00035 |
Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 7049182..7050408 (+) | 68347791 |
Experimental investigation has been performed. Bioinformatics investigation has been performed| Immunity protein ID | Locus tag (Gene) | Related T6SS | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Cognate effector |
|---|---|---|---|---|---|---|---|
| IMU00073 |
PFL_5499 (Tai3) | T6SS00035 |
Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 6278755..6279204 (+) | 70732800 | EFF00045 |
| IMU00074 |
PFL_3036 (Tgi2) | T6SS00035 |
Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 3502296..3502766 (-) | 70730401 | EFF00434 |
| IMU00300 |
PFL_6097 (rhsI) | T6SS00035 |
Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 6929889..6930515 (+) | 70733380 | EFF01474 |
| IMU00301 |
PFL_6210 (Tni2) | T6SS00035 |
Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 7050414..7050875 (+) | 70733493 | EFF01475 |
Experimental investigation has been performed. Bioinformatics investigation has been performed| ID | Locus tag (Gene) | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Response to T6SS attack | Known or putative function |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed| Accessory protein ID | Locus tag (Gene) | Related T6SS | Type | Organism | Replicon (Accession) | Coordinates (Strand) | Protein GI | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|---|
| ACP00012 |
PFL_6095 (eagR1) | T6SS00035 |
adaptor | Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 6924978..6925403 (+) | 499376685 | - | PFL_6096 (RhsA) |
| ACP00013 |
PFL_6099 (eagT2) | T6SS00035 |
adaptor | Pseudomonas protegens Pf-5 | chromosome (NC_004129) | 6930853..6931287 (-) | 499376689 | - | PFL_6209 (Tne2) |