Detailed information of effector


Summary

Effector ID EFF00045 experimental
Effector type Tae
Cognate immunity protein IMU00073 experimental
Related T6SS (Type) T6SS00035 experimental (Type i3)
Strain Pseudomonas protegens Pf-5
Replicon chromosome
Sequence Protein sequence (124 a.a.); Nucleotide sequence (372 bp)
Description Tae3; peptidoglycan amidase
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) PFL_5498 (Tae3)
Coordinates (Strand) 6278373..6278744 (+)
NCBI ID 70732799
RefSeq NC_004129
Uniprot ID UPI000054E04D
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
No matching records found
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-123MWNKEAAISHLNAHAHAGSTGRCAAYTRQAIEAGGGGVILHRKHSAKDFGSSLTSAGFIEQPAGQTPAAGDVVIIQPIPGHPHGHMAMFNGTLWVSDFKQLHGFYPGHSYRVQKPAYKIYRHP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.8556--


  Protein sequence: 124 a.a.    .

>EFF00045 NC_004129:6278373-6278744 Type VI Amidase Effector (Tae) [Pseudomonas protegens Pf-5]
MWNKEAAISHLNAHAHAGSTGRCAAYTRQAIEAGGGGVILHRKHSAKDFGSSLTSAGFIEQPAGQTPAAGDVVIIQPIPG
HPHGHMAMFNGTLWVSDFKQLHGFYPGHSYRVQKPAYKIYRHP*

  Nucleotide sequence: 372 bp    .

>EFF00045 NC_004129:6278373-6278744 Type VI Amidase Effector (Tae) [Pseudomonas protegens Pf-5]
ATGTGGAATAAAGAAGCCGCTATCAGTCACTTGAACGCTCACGCTCACGCCGGTAGTACGGGGCGCTGTGCGGCCTATAC
TCGCCAGGCGATCGAAGCCGGTGGCGGTGGGGTGATTCTGCACAGGAAGCACTCGGCCAAGGACTTCGGCTCATCATTGA
CTTCTGCAGGTTTCATCGAACAGCCGGCCGGCCAGACGCCCGCAGCGGGCGATGTGGTGATCATCCAGCCCATTCCAGGG
CACCCCCACGGTCACATGGCGATGTTCAACGGCACACTCTGGGTGTCAGACTTCAAGCAACTGCACGGTTTCTACCCGGG
GCATTCCTACCGGGTGCAGAAACCTGCCTACAAAATCTATCGCCATCCGTAA