Detailed information of immunity protein


Summary

Immunity protein ID IMU00073 experimental
Cognate effector EFF00045 experimental
Related T6SS (Type) T6SS00035 experimental (Type i3)
Strain Pseudomonas protegens Pf-5
Replicon chromosome
Sequence Protein sequence (150 a.a.); Nucleotide sequence (450 bp)
Description Tai3
Reference
-
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
External database links

Locus tag (Gene) PFL_5499 (Tai3)
Coordinates (Strand) 6278755..6279204 (+)
NCBI ID 70732800
RefSeq NC_004129
Uniprot ID UPI000054E04E
KEGG ID -
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
DUF3828PF12883.98e-2127..142
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-149MRMLFCSLLAAVAMHQSVALADCASSPKPATQAFYSWYLQTFSEDKDPLTDNVAEMKKYVSDSLITKIKKQMASPDGLEEDYFLKAQDYMDEWLTQIKVSEPQVQGSSAKEQVTLGNTPDTTQIVDVRMIKDKGCWKIDEVISTADQSD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
SP(Sec/SPI)0.9893pos: 21-22. ALA-DC.MRMLFCSLLAAVAMHQSVALA


  Protein sequence: 150 a.a.    .

>IMU00073 NC_004129:6278755-6279204 [Pseudomonas protegens Pf-5]
MRMLFCSLLAAVAMHQSVALADCASSPKPATQAFYSWYLQTFSEDKDPLTDNVAEMKKYVSDSLITKIKKQMASPDGLEE
DYFLKAQDYMDEWLTQIKVSEPQVQGSSAKEQVTLGNTPDTTQIVDVRMIKDKGCWKIDEVISTADQSD*

  Nucleotide sequence: 450 bp    .

>IMU00073 NC_004129:6278755-6279204 [Pseudomonas protegens Pf-5]
ATGAGAATGCTGTTCTGCTCGCTGCTGGCAGCGGTCGCGATGCATCAGTCGGTCGCCCTGGCCGACTGCGCCAGTTCGCC
AAAGCCCGCAACCCAGGCGTTTTATAGCTGGTACCTGCAAACCTTCAGCGAAGACAAGGATCCGTTGACCGACAACGTGG
CGGAAATGAAGAAGTACGTCTCCGACTCGCTGATCACCAAGATCAAGAAACAGATGGCCAGCCCCGACGGCCTGGAAGAG
GACTACTTCCTCAAGGCCCAGGACTACATGGATGAGTGGCTGACCCAGATCAAGGTCAGCGAACCACAAGTCCAGGGCTC
CAGCGCCAAGGAGCAAGTGACGTTGGGCAACACCCCGGACACCACCCAGATCGTCGATGTGCGGATGATCAAGGACAAGG
GCTGCTGGAAGATCGATGAAGTGATTTCCACTGCCGACCAGAGCGATTGA