Detailed information of immunity protein


Summary

Immunity protein ID IMU00301 experimental
Cognate effector EFF01475 experimental
Related T6SS (Type) T6SS00035 experimental (Type i3)
Strain Pseudomonas protegens Pf-5
Replicon chromosome
Sequence Protein sequence (154 a.a.); Nucleotide sequence (462 bp)
Description PFL_6210, confers immunity to the activity of the C-terminal domain of PFL_6209 (PFL_6209tox).
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) PFL_6210 (Tni2)
Coordinates (Strand) 7050414..7050875 (+)
NCBI ID 70733493
RefSeq NC_004129
Uniprot ID UPI000054E2F8
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-153 VISDFERIREDGKVIDENMTVDQMIALGWSPCRVVEARWRWQEQLLSVVNSRGLLAIVVPDRQHLAILWNDDDTGVAATLYVVSGDRQQQIRIADQLLINGQLEAGIYSWFEQFPQVSPSIFTCMFSRQRDQAMFRVDIDASTGDIVSIQHSR



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -



  Protein sequence: 154 a.a.    .

>IMU00301 NC_004129:7050414-7050875 [Pseudomonas protegens Pf-5]
VISDFERIREDGKVIDENMTVDQMIALGWSPCRVVEARWRWQEQLLSVVNSRGLLAIVVPDRQHLAILWNDDDTGVAATL
YVVSGDRQQQIRIADQLLINGQLEAGIYSWFEQFPQVSPSIFTCMFSRQRDQAMFRVDIDASTGDIVSIQHSR*

  Nucleotide sequence: 462 bp    .

>IMU00301 NC_004129:7050414-7050875 [Pseudomonas protegens Pf-5]
GTGATTAGTGATTTCGAGCGGATCCGCGAAGACGGCAAGGTCATCGACGAAAACATGACGGTGGACCAGATGATCGCCCT
GGGGTGGTCTCCTTGCCGGGTCGTCGAGGCTCGCTGGCGCTGGCAGGAACAGCTCCTGAGCGTGGTCAACAGCCGCGGCC
TGCTGGCGATCGTGGTGCCGGATCGGCAACACCTGGCCATCCTGTGGAACGATGACGATACGGGCGTGGCCGCAACCCTC
TACGTGGTCTCCGGCGACCGCCAGCAACAGATCAGGATTGCCGACCAGTTACTGATCAATGGCCAGCTCGAGGCAGGTAT
CTACAGCTGGTTCGAACAGTTCCCGCAGGTTTCGCCCAGCATCTTTACCTGCATGTTCAGCCGTCAGCGTGACCAGGCAA
TGTTCAGGGTGGATATCGACGCGTCCACTGGCGACATTGTTTCGATACAGCATTCGCGCTGA