Detailed information of immunity protein


Summary

Immunity protein ID IMU00300 experimental
Cognate effector EFF01474 experimental
Related T6SS (Type) T6SS00035 experimental (Type i3)
Strain Pseudomonas protegens Pf-5
Replicon chromosome
Sequence Protein sequence (209 a.a.); Nucleotide sequence (627 bp)
Description PFL_6097 confers immunity to the C-terminal domain of RhsA (RhsAtox)-mediated toxicity.
Reference
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed

External database links

Locus tag (Gene) PFL_6097 (rhsI)
Coordinates (Strand) 6929889..6930515 (+)
NCBI ID 70733380
RefSeq NC_004129
Uniprot ID UPI000054E288
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-208 MKADTKELRSNFEKALQLFLKSELSGYPGVKVTKNKVVVAQKESGAVATLHFEYLTNTRAYEILIFVEHPALQAEIDQINPPYPSNLANPKFIYSLSTVSEKAACPLLPVTEQGIENTCQVILRQLQDVHLPILFNLFNVSPALVSDVIDRPKYYSYPVPLIFIALKTNKIKPDDETLAKIMSEQTLGYTGHQDLKESFNKQLLAALN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9918 - -



  Protein sequence: 209 a.a.    .

>IMU00300 NC_004129:6929889-6930515 [Pseudomonas protegens Pf-5]
MKADTKELRSNFEKALQLFLKSELSGYPGVKVTKNKVVVAQKESGAVATLHFEYLTNTRAYEILIFVEHPALQAEIDQIN
PPYPSNLANPKFIYSLSTVSEKAACPLLPVTEQGIENTCQVILRQLQDVHLPILFNLFNVSPALVSDVIDRPKYYSYPVP
LIFIALKTNKIKPDDETLAKIMSEQTLGYTGHQDLKESFNKQLLAALN*

  Nucleotide sequence: 627 bp    .

>IMU00300 NC_004129:6929889-6930515 [Pseudomonas protegens Pf-5]
ATGAAAGCAGACACCAAGGAATTGCGCAGCAACTTTGAAAAGGCACTCCAGCTTTTTTTGAAGAGCGAGCTCTCGGGTTA
CCCCGGAGTAAAAGTCACCAAGAACAAAGTGGTGGTTGCACAGAAAGAATCGGGCGCCGTGGCGACCCTGCATTTCGAAT
ACCTGACCAACACCCGCGCCTACGAAATCCTCATCTTCGTCGAACACCCGGCCCTGCAGGCCGAGATCGACCAGATAAAC
CCGCCCTACCCGTCCAACCTGGCCAATCCGAAATTTATCTACAGCTTGTCGACGGTCAGTGAAAAAGCTGCCTGCCCGCT
ACTGCCCGTGACAGAGCAAGGTATTGAAAATACCTGCCAGGTGATTCTGCGCCAGCTCCAGGATGTTCACCTGCCTATTC
TGTTCAACCTCTTCAACGTCAGCCCCGCGCTGGTGAGCGATGTCATAGACAGGCCAAAGTATTACTCCTATCCGGTCCCA
CTGATTTTTATCGCCTTGAAAACCAACAAAATCAAACCGGACGACGAAACGCTAGCGAAGATCATGAGCGAGCAGACCCT
GGGCTACACCGGTCATCAGGACCTGAAAGAGTCGTTCAACAAGCAACTACTGGCAGCACTGAACTGA